Gene detail

Detail information of GWHGAAZE033934

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003631587.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 21-like [Vitis vinifera]
COG	YP_004618138.1	9E-93	ATP-dependent RNA helicase
Swissprot	tr\|P93008\|RH21_ARATH	0	DEAD-box ATP-dependent RNA helicase 21
trEMBL	tr\|F6I1B2\|F6I1B2_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60728.1}
TAIR10	AT2G33730.1	0	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000145	gene	1231924	1234017	-
GWHAAZE00000145	mRNA	1231924	1234017	-
GWHAAZE00000145	exon	1231924	1234017	-
GWHAAZE00000145	CDS	1231924	1234017	-

Transcript Sequence
>GWHTAAZE033974 ATGAAACGTTCAACAGACGACATCGGAGCTAAACTAGAGACGAACAAGAAGAAGCCCGTCTTCCTCACTAAAGCTGAGCGCGAGCAGTTGGCCCTCCAACGCCGCCAAGAAGAAATTGCCCTACAGAAGCAACGCCGCTCCGAAGATAATAATATTCCCCTCCACAACCACAAACCCCCCTCCTCCTCAGATGCCTCCGACTACAACCGCCACCACCGCTCCTCCCGTGATTATGACCGCGAGAGAGACAGGGAAAGGGAAAGGGACCACCGTGATTCTGAGCGGCGCAACAGGGAACGCGACGAAGAGCACAAGGCGAGGGAGCAAGCCCGTCTGGAGAAGCTGGCAGAGAGAGAGCGGGAGAAGGAGCTTGAAGCCATCAAAGAGCAGTACCTTGGAGGCAAAAAGCCAAAGAAGCGGGTTATAAAGCCCAGCGAGAAGTTTCGCTTCTCTTTCGATTGGGAGAACACCGAGGACACCTCCCGAGACATGAATTCCCTCTATCAAAACCCCCACGAGGCCCGTCTCTTGTTCGGTCGAGGCTTCCGTGCCGGCATGGACCGCAGGGAGCAGAAAAAGGTTGCTGCCAAGAACGAGAGAGAACTGAGGGACGAGATCCGCAAAAAGGAGGGTGTCGAGGAGAAGCCTGAGGAGGCTGCTGCCCAGAGGCTCAAGGATGAGGCTGCCGATTCGTACGACACATTTGACATGAGGGTCGACCGCCACTGGTCCGATAAGAAGCTCGATGAGATGACCGAGAGGGACTGGAGGATTTTCAGGGAGGACTTCAACATTTCCTACAAGGGTTCCAGGATTCCCCGACCTATGAGGAGCTGGGTCGAGAGTCGTCTTAGTTCGGAGCTGTTGAAGGCGGTGGACAGGGCTGGTTACAAGACCCCATCCCCCATTCAGATGGCTGCCATTCCCCTTGGCCTCCAGCAACGCGATGTCATCGGTGTTGCTGAGACTGGCTCTGGTAAGACTGCAGCTTTTGTTCTCCCTATGCTCACTTACATATCTAGGCTCCCTCCCATGAGCGAAGAGAACGAGGCAGAGGGTCCTTACGCCGTTGTCATGGCACCTACTCGAGAACTCGCCCAGCAGATTGAGGACGAAACTGTCAAGTTTGCTCACTACTTGGGTATCAAGGTTGTTTCAATTGTGGGCGGGCAGTCCATTGAGGAGCAGGGTTTCAAGATCAGGCAAGGTTGTGAGGTTGTGATTGCCACTCCCGGACGTCTAATTGATTGCTTGGAGAGGCGCTATGCTGTCCTGAACCAGTGTAATTATGTTGTTCTCGACGAGGCCGATCGCATGATTGATATGGGTTTTGAACCACAAGTTGTTGGTGTCTTGGATGCAATGCCCTCTAGCAATTTCAAACCTGAGAATGAGGATGAAGAGCTCGACGAGAAAAGGATTTACAGGACCACTTATATGTTCAGTGCTACCATGCCACCAGCTGTCGAGCGTCTTGCAAGGAAGTACTTGAGAAATCCGGTTGTAGTGACAATTGGAACTGCTGGAAAGGCAACTGACCTCATTACTCAGCACGTGATTATGATGAAGGAATCGGAGAAAATGTATAGGTTGCAGAAGTTGCTGGACGAACTTGGAGACAAGACGGCAATAGTATTCATAAACACCAAAAAGTCGGCTGATGGGCTCGCCAAGAATTTGGATAAGTCGGGATACAGGGTGACAACTTTGCATGGTGGCAAGTCACAGGACCAGAGAGAAATCAGCCTTGAAGGCTTCAGAACCAAGAGATACAATGTGTTGGTTGCCACCGATGTAGCAGGACGTGGGATTGATATACCAGATGTGGCCCATGTCATCAATTTTGATATGCCTGGTAATATCGAGATGTACACTCACCGAATTGGAAGAACAGGTCGTGCTGGGAAGACGGGTATAGCCACTACATTTCTGACTTTGCATGACAGTGACGTCTTCTATGATCTCAAGCAGATGCTTATCCAGAGCAACAGTCCTGTACCTCCTGAGCTGGCTAGACACGAAGCTTCGAAATTCAAGCCAGGATCAATTCCTGACAGGCCACCTAGACGTAATGAAACTGTGTTTGTTCATTGA

Network for GWHGAAZE033934

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	302	492	1.10E-48
PF00271.32	Helicase_C	527	635	5.40E-32

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12858	DDX23, PRP28	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	32.343
	SRR3591706	second leaf	23.301
	SRR3591707	mature leaf	25.383
	SRR3591708	Shoot apex	42.575
	SRR3591709	Stem	30.518
	SRR3591710	White floral bud	39.976
	SRR3591711	White flower	45.610
	SRR3591712	Green floral bud	41.183
	SRR3591713	Yellow flower	36.605
SRP173429	SRR8316895	Juvenile bud stage	24.496
	SRR8316896	Juvenile bud stage	37.001
	SRR8316897	Juvenile bud stage	15.179
	SRR8316894	Third green stage	12.314
	SRR8316900	Third green stage	31.845
	SRR8316901	Third green stage	34.586
	SRR8316898	Complete white stage	12.981
	SRR8316899	Complete white stage	41.907
	SRR8316903	Complete white stage	22.133
	SRR8316902	Silver flowering stage	16.275
	SRR8316904	Silver flowering stage	21.150
	SRR8316905	Silver flowering stage	9.805
	SRR8316906	Gold flowering stage	36.110
	SRR8316907	Gold flowering stage	35.966
	SRR8316908	Gold flowering stage	38.840
SRP132670	SRR6706286	Control	47.336
	SRR6706287	Light intensity 50%	42.043
	SRR6706288	Light intensity 20%	42.861
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	38.466
	CNS0095593	Slightly white alabastrum(diploid) 2	37.450
	CNS0095594	Slightly white alabastrum(diploid) 3	39.749
	CNS0095595	Whole white alabastrum(diploid) 2	34.244
	CNS0095596	Whole white alabastrum(diploid) 3	31.752
	CNS0095597	Whole white alabastrum(diploid) 4	32.393
	CNS0095598	Silvery flower (diploied) 1	52.040
	CNS0095599	Silvery flower (diploied) 2	43.330
	CNS0095600	Silvery flower (diploied) 3	57.113
	CNS0095601	Golden flower (diploid) 1	65.986
	CNS0095602	Golden flower (diploid) 2	78.346
	CNS0095603	Golden flower (diploid) 3	74.191
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.436
	CNS0095605	Slightly white alabastrum(tetraploid) 2	42.668
	CNS0095606	Slightly white alabastrum(tetraploid) 3	48.921
	CNS0095607	Whole white alabastrum(tetraploid) 1	35.932
	CNS0095608	Whole white alabastrum(tetraploid) 2	28.340
	CNS0095609	Whole white alabastrum(tetraploid) 3	35.948
	CNS0095610	Silvery flower (tetraploid) 1	50.005
	CNS0095611	Silvery flower (tetraploid) 2	66.763
	CNS0095612	Silvery flower (tetraploid) 3	38.996
	CNS0095613	Golden flower (tetraploid) 1	38.039
	CNS0095614	Golden flower (tetraploid) 2	56.675
	CNS0095615	Golden flower (tetraploid) 3	55.693
CRA001975	CRR073297	Stem 1	65.592
	CRR073298	Stem 2	63.836
	CRR073299	Stem 3	69.519
	CRR073300	Leaf 1	61.951
	CRR073301	Leaf 2	55.627
	CRR073302	Leaf 3	49.519
	CRR073303	Juvenile bud 1	48.136
	CRR073304	Juvenile bud 2	35.267
	CRR073305	Juvenile bud 3	71.532
	CRR073306	Third green 1	21.510
	CRR073307	Third green 2	17.272
	CRR073308	Third green 3	18.977
	CRR073309	Second white 1	33.039
	CRR073310	Second white 2	23.350
	CRR073311	Second white 3	26.647
	CRR073312	Silver flowering 1	28.615
	CRR073313	Silver flowering 2	36.437
	CRR073314	Silver flowering 3	26.180
	CRR073315	Gold flowering 1	28.992
	CRR073316	Gold flowering 2	37.110
	CRR073317	Gold flowering 3	42.718
	CRR073318	Tawny withering 1	47.491
	CRR073319	Tawny withering 2	30.816
	CRR073320	Tawny withering 3	39.497