Gene detail

Detail information of GWHGAAZE033932

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009787251.1	0	PREDICTED: protein ECERIFERUM 1-like isoform X1 [Nicotiana sylvestris]
COG	YP_006918135.1	2E-13	hypothetical protein M5M_16375
Swissprot	tr\|F4HVY0\|CER1_ARATH	8E-163	Protein ECERIFERUM 1
trEMBL	tr\|M1D7B9\|M1D7B9_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400083907}
TAIR10	AT1G02205.2	4E-124	Fatty acid hydroxylase superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000145	gene	1221146	1223125	+
GWHAAZE00000145	mRNA	1221146	1223125	+
GWHAAZE00000145	exon	1221146	1221332	+
GWHAAZE00000145	exon	1221480	1221699	+
GWHAAZE00000145	exon	1222118	1222493	+
GWHAAZE00000145	exon	1222659	1222773	+
GWHAAZE00000145	exon	1222863	1223125	+
GWHAAZE00000145	CDS	1221146	1221332	+
GWHAAZE00000145	CDS	1221480	1221699	+
GWHAAZE00000145	CDS	1222118	1222493	+
GWHAAZE00000145	CDS	1222659	1222773	+
GWHAAZE00000145	CDS	1222863	1223125	+

Transcript Sequence
>GWHTAAZE033972 ATGACAATGGAAAGAGCATCTCACTTGCCTTTCTGGAGAACAGATGGTATTGTAATCACAATATTGCTTCATATCGGACCGGTGGAGTTCCTTTACTATTGGCTCCACAGGGCATTGCACCACCACTATCTCTACTCTCGCTACCATTCCCACCACCACTCCTCCGTTGCCACCGAGCCTATTTCTTCTGTTGCACATCCATTTGCAGAGTTATTATCATATTTTTTGCTGTTTGCAATACCAATGATGACAACAGTGTTAGGTGGAACTGCTTCAATGGTGTCCCTATTTGGCTATATCACTTACATTGATCTAATGAACAACATGGGTCACTGCAATTTTGAGTTTATTCCAAACACCCTCTTCTCATTCTTTCCTCCTCTCAAGTACTTGATGTACACACCATCATACCACTCTCTTCATCACACCCAATTTCGGACTAATTACTCACTCTTCATGCCGATTTATGACTACATCTATGGTACTATGGACAAGTCCACTGATACACTGCATGGAGATTCACTCATGAGACAAGAAGAGCTACCGGACGTCATTCATTTGACGCATCTAACCATGCCGGATTCCATATATCATCTCCGGCTAGGGTTGGCCTCTTATGCTTCGAAGCCCCACACACCCAAATGGTGCATATGGTTAATGTGGCCTGTGACATGTTGGTCCATGATCATGACATGCCTATGTGGTCGTACATTCACCACAGAGAGCAACACATTTAAAAAACTCAATTTACAATCTTGGGTAATACCACGGTACAGTATACAGTACTTGCATGAATGGAAAAGAGATAAAATAAATAAGTTGATTGAAGATGCTATACTTGAAGCAGAGGCTAGAGGCACTAAGGTGTTGAGTCTAGGTCTCTTGAATCAGGCAAGTGAATTGAATGGTAATGGGGAACTTTACATAAAAAGGTACCCTGAATTGAAAGTGAAGTTGGTGGATGGAAGTAGTCTGGTAGTTGCAATTGTGATTCACAAAATTCCAAAAGGAACAACACAAGTACTACTAGTAGCCAAACAACAATCTAAAGTTGCCTCTTCTATTGCCTCTGCATTATGCCAATGTGGTATTCAGGTATATACAGTGGCAGAATCAGAAATTTATGTAAGAGGCCCGGGGGGTGGAGAATTCAAAGCATAA

Network for GWHGAAZE033932

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04116.14	FA_hydroxylase	23	162	2.30E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15404	K15404, CER1	Biosynthesis of secondary metabolites	map01110
K15404	K15404, CER1	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

GO term	Ontology	Name
GO:0008610	biological_process	lipid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.351
	SRR3591706	second leaf	19.849
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	95.323
	SRR3591709	Stem	0.288
	SRR3591710	White floral bud	3.845
	SRR3591711	White flower	3.343
	SRR3591712	Green floral bud	8.930
	SRR3591713	Yellow flower	3.061
SRP173429	SRR8316895	Juvenile bud stage	102.944
	SRR8316896	Juvenile bud stage	142.807
	SRR8316897	Juvenile bud stage	25.585
	SRR8316894	Third green stage	39.729
	SRR8316900	Third green stage	0.755
	SRR8316901	Third green stage	15.880
	SRR8316898	Complete white stage	0.030
	SRR8316899	Complete white stage	0.089
	SRR8316903	Complete white stage	0.016
	SRR8316902	Silver flowering stage	0.607
	SRR8316904	Silver flowering stage	1.957
	SRR8316905	Silver flowering stage	0.371
	SRR8316906	Gold flowering stage	4.834
	SRR8316907	Gold flowering stage	3.493
	SRR8316908	Gold flowering stage	14.394
SRP132670	SRR6706286	Control	16.847
	SRR6706287	Light intensity 50%	14.009
	SRR6706288	Light intensity 20%	0.808
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.294
	CNS0095593	Slightly white alabastrum(diploid) 2	2.202
	CNS0095594	Slightly white alabastrum(diploid) 3	26.132
	CNS0095595	Whole white alabastrum(diploid) 2	0.232
	CNS0095596	Whole white alabastrum(diploid) 3	0.081
	CNS0095597	Whole white alabastrum(diploid) 4	0.032
	CNS0095598	Silvery flower (diploied) 1	1.995
	CNS0095599	Silvery flower (diploied) 2	5.243
	CNS0095600	Silvery flower (diploied) 3	9.789
	CNS0095601	Golden flower (diploid) 1	1.176
	CNS0095602	Golden flower (diploid) 2	11.307
	CNS0095603	Golden flower (diploid) 3	10.858
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.651
	CNS0095605	Slightly white alabastrum(tetraploid) 2	4.656
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.072
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.675
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.037
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.349
	CNS0095610	Silvery flower (tetraploid) 1	5.830
	CNS0095611	Silvery flower (tetraploid) 2	7.286
	CNS0095612	Silvery flower (tetraploid) 3	4.565
	CNS0095613	Golden flower (tetraploid) 1	11.865
	CNS0095614	Golden flower (tetraploid) 2	6.158
	CNS0095615	Golden flower (tetraploid) 3	3.679
CRA001975	CRR073297	Stem 1	138.891
	CRR073298	Stem 2	123.498
	CRR073299	Stem 3	172.942
	CRR073300	Leaf 1	1.208
	CRR073301	Leaf 2	2.192
	CRR073302	Leaf 3	2.198
	CRR073303	Juvenile bud 1	0.211
	CRR073304	Juvenile bud 2	0.102
	CRR073305	Juvenile bud 3	0.052
	CRR073306	Third green 1	0.587
	CRR073307	Third green 2	6.176
	CRR073308	Third green 3	0.985
	CRR073309	Second white 1	1.730
	CRR073310	Second white 2	3.052
	CRR073311	Second white 3	7.502
	CRR073312	Silver flowering 1	6.863
	CRR073313	Silver flowering 2	2.190
	CRR073314	Silver flowering 3	9.638
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.005
	CRR073317	Gold flowering 3	0.011
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.002
	CRR073320	Tawny withering 3	0.000