Gene detail

Detail information of GWHGAAZE033924

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009792096.1	0	PREDICTED: galactinol synthase 2 [Nicotiana sylvestris]
COG	YP_004116387.1	2E-27	glycosyl transferase family protein
Swissprot	tr\|C7G304\|GOLS2_SOLLC	0	Galactinol synthase 2
trEMBL	tr\|A0A068JCE2\|A0A068JCE2_TOBAC	0	Galactinol synthase 2 {ECO:0000313\|EMBL:AIE16185.1}
TAIR10	AT1G56600.1	5E-136	galactinol synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000145	gene	1098300	1100025	-
GWHAAZE00000145	mRNA	1098300	1100025	-
GWHAAZE00000145	exon	1099693	1100025	-
GWHAAZE00000145	exon	1099005	1099325	-
GWHAAZE00000145	exon	1098300	1098734	-
GWHAAZE00000145	CDS	1099693	1100025	-
GWHAAZE00000145	CDS	1099005	1099325	-
GWHAAZE00000145	CDS	1098390	1098734	-
GWHAAZE00000145	three_prime_UTR	1098300	1098389	-

Transcript Sequence
>GWHTAAZE033964 ATGGCTCCCGATCTTGGTGTTGCTCCCGTTAACTCCGGCACCGGCCTGGTGAAGGCGGCTAGTCTCTCAAGCCGTGCTTACGTCACTTTCCTGGCCGGCACCGGAGACTACGTCAAAGGCGTGGTGGGTCTCGCCAAAGGGCTGAGAAAGGCCAAATCCACGTACCCTCTCGTGGTGGCGGTTCTGCCTGACGTGCCGGTTGAGCACCGCCGCATACTGGTGTCCCAGGGATGTATAGTCCGGGAGATAGAGCCGGTGTACCCGCCGGCAAATCAGACTGATTTCGCTATGGCGTATTACGTCATCAACTACTCCAAGCTCCGAATTTGGGAGTTTGTGGAGTACAGCAAAGTGATATACTTGGATGGGGATATACAAGTGTTTGAAAATATAGACCACCTCTTTGACTTGCCAGGTGGCTACTTTTATGCTGTGATGGATTGTTTCTGTGAGAAAACATGGAGTCACAGCCCACAGTACAAGATTGGGTACTGCCAGCAGTGCCCTAATAAGGTCCAGTGGGACCCAGAGTTGGGCCCAAAGCCACCTCTGTACTTCAATGCTGGCATGTTTTTGTATGAACCCAATCTCTCCACCTACCATGATCTCCTCACCACCCTCCAAGTCACCCTTCCTACCTCTTTTGCTGAGCAGGACTTTTTGAATATGTACTTTAGGGATATATACAGGCCAATCTCTTCATCATACAATTTAGTGTTGGCCATGCTATGGCGCCACCCAGAGAATGTTGACCTAAACAAAGTGAAAGTGGTCCATTACTGTGCGGCCGGCTCGAAGCCATGGAGGTACACCGGGGAAGAAGAGAACATGCAGAGAGAAGACATAAAGATGCTTGTTCAAAAATGGCAAGAAATATACGACGACGCTTCATTAGATTACAATGCACCGGTGAACGACGATGGTCTCCAAGAGCTTGTGGCGGCAGCATTATCGGCCGCTAGACGTGTTCGCCACATCACCGCCCCATCTGCCGCCTAGGTGGCTGCAGTTCTTTTAATCTTTTGTTTCATACACACACCCACCTCTTTTTTTTTGTTTGGAGGATGGTATAGATGTCATTTAATTTGA

Network for GWHGAAZE033924

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01501.21	Glyco_transf_8	29	271	1.40E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18819	GOLS	Metabolic pathways	map01100
K18819	GOLS	Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.986
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.431
	SRR3591708	Shoot apex	2.574
	SRR3591709	Stem	2.847
	SRR3591710	White floral bud	2.289
	SRR3591711	White flower	1.327
	SRR3591712	Green floral bud	1.074
	SRR3591713	Yellow flower	2.504
SRP173429	SRR8316895	Juvenile bud stage	0.358
	SRR8316896	Juvenile bud stage	0.406
	SRR8316897	Juvenile bud stage	0.780
	SRR8316894	Third green stage	0.644
	SRR8316900	Third green stage	4.401
	SRR8316901	Third green stage	8.340
	SRR8316898	Complete white stage	5.043
	SRR8316899	Complete white stage	24.034
	SRR8316903	Complete white stage	5.922
	SRR8316902	Silver flowering stage	0.801
	SRR8316904	Silver flowering stage	0.706
	SRR8316905	Silver flowering stage	0.199
	SRR8316906	Gold flowering stage	0.346
	SRR8316907	Gold flowering stage	0.336
	SRR8316908	Gold flowering stage	0.527
SRP132670	SRR6706286	Control	5.419
	SRR6706287	Light intensity 50%	5.994
	SRR6706288	Light intensity 20%	4.497
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.455
	CNS0095593	Slightly white alabastrum(diploid) 2	2.094
	CNS0095594	Slightly white alabastrum(diploid) 3	2.634
	CNS0095595	Whole white alabastrum(diploid) 2	1.751
	CNS0095596	Whole white alabastrum(diploid) 3	1.085
	CNS0095597	Whole white alabastrum(diploid) 4	4.239
	CNS0095598	Silvery flower (diploied) 1	4.208
	CNS0095599	Silvery flower (diploied) 2	3.234
	CNS0095600	Silvery flower (diploied) 3	4.896
	CNS0095601	Golden flower (diploid) 1	2.654
	CNS0095602	Golden flower (diploid) 2	6.646
	CNS0095603	Golden flower (diploid) 3	5.815
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.117
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.085
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.961
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.560
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.749
	CNS0095610	Silvery flower (tetraploid) 1	7.143
	CNS0095611	Silvery flower (tetraploid) 2	3.060
	CNS0095612	Silvery flower (tetraploid) 3	4.682
	CNS0095613	Golden flower (tetraploid) 1	0.589
	CNS0095614	Golden flower (tetraploid) 2	2.141
	CNS0095615	Golden flower (tetraploid) 3	5.307
CRA001975	CRR073297	Stem 1	4.776
	CRR073298	Stem 2	5.924
	CRR073299	Stem 3	2.992
	CRR073300	Leaf 1	49.468
	CRR073301	Leaf 2	54.275
	CRR073302	Leaf 3	22.400
	CRR073303	Juvenile bud 1	53.198
	CRR073304	Juvenile bud 2	82.039
	CRR073305	Juvenile bud 3	50.709
	CRR073306	Third green 1	0.952
	CRR073307	Third green 2	3.408
	CRR073308	Third green 3	5.944
	CRR073309	Second white 1	1.146
	CRR073310	Second white 2	2.786
	CRR073311	Second white 3	1.369
	CRR073312	Silver flowering 1	4.910
	CRR073313	Silver flowering 2	5.104
	CRR073314	Silver flowering 3	3.815
	CRR073315	Gold flowering 1	0.348
	CRR073316	Gold flowering 2	1.040
	CRR073317	Gold flowering 3	0.942
	CRR073318	Tawny withering 1	2.902
	CRR073319	Tawny withering 2	4.149
	CRR073320	Tawny withering 3	7.501