Gene detail

Detail information of GWHGAAZE033912

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010045729.1	0	PREDICTED: S-adenosylmethionine synthase 5 [Eucalyptus grandis]
COG	YP_008801702.1	2E-158	S-adenosylmethionine synthetase
Swissprot	tr\|Q96551\|METK1_CATRO	0	S-adenosylmethionine synthase 1
trEMBL	tr\|A0A059DD20\|A0A059DD20_EUCGR	0	S-adenosylmethionine synthase {ECO:0000256\|RuleBase:RU000541}
TAIR10	AT4G01850.2	0	S-adenosylmethionine synthetase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000145	gene	769724	770905	-
GWHAAZE00000145	mRNA	769724	770905	-
GWHAAZE00000145	exon	769724	770905	-
GWHAAZE00000145	CDS	769724	770905	-

Transcript Sequence
>GWHTAAZE033952 ATGGACACCTTCTTGTTCACCTCCGAATCCGTGAACGAGGGCCATCCCGACAAGCTTTGTGATCAGATATCCGACGCAGTGCTCGATGCCTGCCTTGAACAAGACCCTGACAGCAAAGTTGCCTGCGAGACTTGCACCAAGACCAACATGGTCATGGTTTTTGGTGAGATCACAACCAAAGCCAAGATCGACTACGAGAAGATCGTGCGTGACACCTGCCGAACCATCGGGTTTGTTTCTGATGATGTTGGGCTCGATGCTGACCACTGCAAGGTCCTAGTCCAGATTGAACAACAGAGCCCTGATATTGCCCAAGGTGTCCACGGTCACTTGACCAAGCGCCCTGAGGAGATTGGTGCCGGTGACCAAGGTCACATGTTCGGTTATGCCACCGACGAAACCCCCGAGCTAATGCCACTAAGTCACGTGCTCGCTACCAAGATCGGGGCCAAGCTCACTGAGGTCCGCAAGAACGGTACCTGCCCGTGGTTAAGACCTGACGGCAAGACCCAAGTCACTGTTGAGTATCTCAACGAGAATGGTGCGATGGTTCCAGTCCGTGTCCACACCGTCCTTATCTCCACACAACACGACGAAACCGTCACAAACGATGAGATCGCCGCAGACCTAAAGGAGCATGTGATCAAGCCCGTTGTACCGGAGAAGTACCTTGATGAGAAGACCATCTTCCACCTCAACCCATCGGGCCGGTTCGTCATCGGTGGACCCCACGGTGACGCTGGTCTCACAGGCCGGAAAATCATCATCGACACCTATGGTGGGTGGGGAGCCCACGGTGGTGGTGCCTTCTCCGGGAAGGACCCCACCAAGGTCGACAGAAGTGGGGCCTATATTGTGAGGCAAGCAGCCAAGAGCATTGTGGCGAGTGGGCTAGCCAGGAGGTGTATCGTGCAGGTCTCGTACGCCATTGGTGTGCCCGAACCATTGTCAGTGTTTGTGGACTCATACGGGACCGGGAAGATTCCAGATAAGGAGATATTGAAGATTGTGAAGGAGAACTTTGATTTCAGGCCTGGGATGATAGCTATTGACCTTGATTTGAAGAGGGGTGGAAATAGGAGGTTCTTGAAGACAGCTGCATATGGTCATTTTGGAAGGGATGACCCTGATTTCACATGGGAGGTGATTAAGCCCCTCAAGTGGGATAAGCCACAAAATTAA

Network for GWHGAAZE033912

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00438.21	S-AdoMet_synt_N	4	101	2.00E-42
PF02772.17	S-AdoMet_synt_M	117	238	1.50E-47
PF02773.17	S-AdoMet_synt_C	240	381	8.50E-62

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00789	metK	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Biosynthesis of amino acids	map01230
		Cysteine and methionine metabolism	map00270

Gene Ontology

GO term	Ontology	Name
GO:0006556	biological_process	S-adenosylmethionine biosynthetic process
GO:0004478	molecular_function	methionine adenosyltransferase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	927.065
	SRR3591706	second leaf	577.782
	SRR3591707	mature leaf	215.819
	SRR3591708	Shoot apex	697.955
	SRR3591709	Stem	3328.997
	SRR3591710	White floral bud	1499.733
	SRR3591711	White flower	966.110
	SRR3591712	Green floral bud	825.316
	SRR3591713	Yellow flower	1063.389
SRP173429	SRR8316895	Juvenile bud stage	464.347
	SRR8316896	Juvenile bud stage	454.416
	SRR8316897	Juvenile bud stage	171.936
	SRR8316894	Third green stage	170.791
	SRR8316900	Third green stage	690.674
	SRR8316901	Third green stage	746.387
	SRR8316898	Complete white stage	566.373
	SRR8316899	Complete white stage	936.478
	SRR8316903	Complete white stage	720.390
	SRR8316902	Silver flowering stage	714.571
	SRR8316904	Silver flowering stage	981.885
	SRR8316905	Silver flowering stage	553.523
	SRR8316906	Gold flowering stage	1574.455
	SRR8316907	Gold flowering stage	2164.686
	SRR8316908	Gold flowering stage	3000.011
SRP132670	SRR6706286	Control	749.258
	SRR6706287	Light intensity 50%	871.974
	SRR6706288	Light intensity 20%	929.400
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	387.990
	CNS0095593	Slightly white alabastrum(diploid) 2	505.270
	CNS0095594	Slightly white alabastrum(diploid) 3	340.515
	CNS0095595	Whole white alabastrum(diploid) 2	412.414
	CNS0095596	Whole white alabastrum(diploid) 3	417.778
	CNS0095597	Whole white alabastrum(diploid) 4	368.097
	CNS0095598	Silvery flower (diploied) 1	344.507
	CNS0095599	Silvery flower (diploied) 2	403.194
	CNS0095600	Silvery flower (diploied) 3	738.525
	CNS0095601	Golden flower (diploid) 1	245.760
	CNS0095602	Golden flower (diploid) 2	469.569
	CNS0095603	Golden flower (diploid) 3	465.910
	CNS0095604	Slightly white alabastrum(tetraploid) 1	403.791
	CNS0095605	Slightly white alabastrum(tetraploid) 2	329.289
	CNS0095606	Slightly white alabastrum(tetraploid) 3	973.093
	CNS0095607	Whole white alabastrum(tetraploid) 1	225.654
	CNS0095608	Whole white alabastrum(tetraploid) 2	221.387
	CNS0095609	Whole white alabastrum(tetraploid) 3	700.510
	CNS0095610	Silvery flower (tetraploid) 1	695.700
	CNS0095611	Silvery flower (tetraploid) 2	598.235
	CNS0095612	Silvery flower (tetraploid) 3	2964.795
	CNS0095613	Golden flower (tetraploid) 1	944.433
	CNS0095614	Golden flower (tetraploid) 2	621.854
	CNS0095615	Golden flower (tetraploid) 3	543.435
CRA001975	CRR073297	Stem 1	912.976
	CRR073298	Stem 2	864.785
	CRR073299	Stem 3	1208.743
	CRR073300	Leaf 1	1143.706
	CRR073301	Leaf 2	1028.751
	CRR073302	Leaf 3	1523.813
	CRR073303	Juvenile bud 1	1553.243
	CRR073304	Juvenile bud 2	2156.396
	CRR073305	Juvenile bud 3	1544.132
	CRR073306	Third green 1	5698.888
	CRR073307	Third green 2	4545.747
	CRR073308	Third green 3	4266.603
	CRR073309	Second white 1	3744.070
	CRR073310	Second white 2	2107.039
	CRR073311	Second white 3	1955.818
	CRR073312	Silver flowering 1	2406.410
	CRR073313	Silver flowering 2	3083.701
	CRR073314	Silver flowering 3	2479.238
	CRR073315	Gold flowering 1	254.804
	CRR073316	Gold flowering 2	390.477
	CRR073317	Gold flowering 3	443.366
	CRR073318	Tawny withering 1	1399.792
	CRR073319	Tawny withering 2	1567.173
	CRR073320	Tawny withering 3	1578.491