Gene detail

Detail information of GWHGAAZE033908

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAN65734.1	0	hypothetical protein VITISV_037750 [Vitis vinifera]
COG	YP_004092358.1	6E-28	serine/threonine protein kinase with PASTA sensor(s)
Swissprot	tr\|Q9SJG2\|Y2296_ARATH	0	Probable receptor-like protein kinase At2g42960
trEMBL	tr\|A5BJT6\|A5BJT6_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN65734.1}
TAIR10	AT1G56720.3	0	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000145	gene	657730	661271	+
GWHAAZE00000145	mRNA	657730	661271	+
GWHAAZE00000145	exon	657730	658400	+
GWHAAZE00000145	exon	658714	658818	+
GWHAAZE00000145	exon	659659	659781	+
GWHAAZE00000145	exon	659876	660046	+
GWHAAZE00000145	exon	660170	660299	+
GWHAAZE00000145	exon	661047	661271	+
GWHAAZE00000145	CDS	657730	658400	+
GWHAAZE00000145	CDS	658714	658818	+
GWHAAZE00000145	CDS	659659	659781	+
GWHAAZE00000145	CDS	659876	660046	+
GWHAAZE00000145	CDS	660170	660299	+
GWHAAZE00000145	CDS	661047	661271	+

Transcript Sequence
>GWHTAAZE033948 AACTTTATCATACAGAAAATGGCCACTGAGCTTAACGCAGGATTGTCCAAGAGAACCTCCATTTTTGGTCTTAAAGTATGGGAACTGATCGGAATCTTTATCGGGTTATTTATAGTAGCAATCCTCTTCGCATTATCTTATTATCTTACATCACAAAAGAAATCGAAAAAAGCTAGAGAAAAAAAGACTCCCTTGACCCAAATCCCGATTGTCTCGAAGGAAATTAAAGAAGTTTCAACAAATGAATTCTTTCCACGGGACGGGGTTCTTCTCACCATTCAAGACAAATCGAGCGACAAAGAATCGGAGAAGGTTATGCTCCATTTGGGAAAAACGGGGAACGGAGATAACAACAGCAGTCAATTGGGTTCATTTCGTCATCTTGAGAAAGATGGTTTGGGGTCCCAATCGGGTGAAGAAGGGAGTTCGGGCAAATTTTCAGCCTATAAAGCTTCATCTTCTCATGGAAAAAAGGCTCCTTCGCCTCTAACAGGTTTGCCTGAGTTTTCTCACTTGGGTTGGGGCCATTGGTTCACGTTACGGGATCTTGAACTCGCAACGGACCGGTTTTCGAAGGATAATGTTATTGGTGAGGGTGGATATGGTGTTGTTTATAGGGGACAATTGGTTAATGGGACTCAGGTGGCAGTTAAAAAGCTCTTTAACAACTTGGGACAAGCAGAGAAGGAATTCAGTGTGGAGGTTGAAGCTATTGGGCACGTGCGTCATAAAAATTTGGTTCGGCTTTTGGGATATTGCATCGAAGGAACTCACAGGATGTTAGTATATGAGTATGTGAACAACGGAAATTTAGAACAATGGCTTCATGGAGCTATGCGCCAGCATGGCTATCTTACTTGGGAGGCCAGGACTAAGGTTCTTCTTGGCACAGCTAAGGCTCTTGCGTACTTGCACGAAGCAATTGAGCCAAAAGTAGTGCACCGAGACATAAAGTCGAGTAATATATTGATGGATGATGACTTCAGTGCCAAGGTTTCAGATTTTGGCCTGGCTAAGCTACTCGGTGCTGGCAAAAGTCACATCACTACTCGGGTTATGGGAACCTTCGGATATGTGGCTCCTGAATATGCGAATACTGGCCTTTTGAATGAAAAGAGCGACGTTTATAGCTTTGGGGTTGTGCTTTTGGAGGCAATTACAGGAAGAGATCCTGTGGATTATGGTCGTCCTGCTCCAGAGGTAAATCTCGTCGATTGGCTGAAAATGATGGTGGGGAGTAGGCGGTCGGAGGAGGTGGTGGACCCAAACATTGAAACAAGGCCATCAACAAGAGCCCTCAAGCGGGCCCTCTTAACTGCATTGAGATGCGTCGACCCGGATTCTGATAAGAGACCTAAAATGAGCCAAGTTGTTCGTATGCTTGAATCCGAGGAATATCCAATACCAAGAGAGGTTAGTTTCTAA

Network for GWHGAAZE033908

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	191	459	4.00E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-V

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	63.580
	SRR3591706	second leaf	49.370
	SRR3591707	mature leaf	21.194
	SRR3591708	Shoot apex	28.581
	SRR3591709	Stem	185.344
	SRR3591710	White floral bud	29.537
	SRR3591711	White flower	15.837
	SRR3591712	Green floral bud	36.305
	SRR3591713	Yellow flower	11.637
SRP173429	SRR8316895	Juvenile bud stage	23.259
	SRR8316896	Juvenile bud stage	26.930
	SRR8316897	Juvenile bud stage	11.052
	SRR8316894	Third green stage	11.979
	SRR8316900	Third green stage	41.906
	SRR8316901	Third green stage	39.377
	SRR8316898	Complete white stage	13.655
	SRR8316899	Complete white stage	47.157
	SRR8316903	Complete white stage	23.296
	SRR8316902	Silver flowering stage	3.507
	SRR8316904	Silver flowering stage	6.784
	SRR8316905	Silver flowering stage	3.301
	SRR8316906	Gold flowering stage	5.932
	SRR8316907	Gold flowering stage	4.741
	SRR8316908	Gold flowering stage	9.856
SRP132670	SRR6706286	Control	43.725
	SRR6706287	Light intensity 50%	49.192
	SRR6706288	Light intensity 20%	50.456
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.841
	CNS0095593	Slightly white alabastrum(diploid) 2	21.485
	CNS0095594	Slightly white alabastrum(diploid) 3	14.948
	CNS0095595	Whole white alabastrum(diploid) 2	18.543
	CNS0095596	Whole white alabastrum(diploid) 3	17.168
	CNS0095597	Whole white alabastrum(diploid) 4	16.365
	CNS0095598	Silvery flower (diploied) 1	21.354
	CNS0095599	Silvery flower (diploied) 2	19.547
	CNS0095600	Silvery flower (diploied) 3	10.585
	CNS0095601	Golden flower (diploid) 1	13.706
	CNS0095602	Golden flower (diploid) 2	8.965
	CNS0095603	Golden flower (diploid) 3	8.502
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.559
	CNS0095605	Slightly white alabastrum(tetraploid) 2	18.895
	CNS0095606	Slightly white alabastrum(tetraploid) 3	70.220
	CNS0095607	Whole white alabastrum(tetraploid) 1	16.829
	CNS0095608	Whole white alabastrum(tetraploid) 2	14.785
	CNS0095609	Whole white alabastrum(tetraploid) 3	39.600
	CNS0095610	Silvery flower (tetraploid) 1	11.860
	CNS0095611	Silvery flower (tetraploid) 2	12.152
	CNS0095612	Silvery flower (tetraploid) 3	13.315
	CNS0095613	Golden flower (tetraploid) 1	4.955
	CNS0095614	Golden flower (tetraploid) 2	8.277
	CNS0095615	Golden flower (tetraploid) 3	3.055
CRA001975	CRR073297	Stem 1	36.050
	CRR073298	Stem 2	35.479
	CRR073299	Stem 3	33.352
	CRR073300	Leaf 1	45.319
	CRR073301	Leaf 2	44.711
	CRR073302	Leaf 3	36.140
	CRR073303	Juvenile bud 1	44.401
	CRR073304	Juvenile bud 2	37.557
	CRR073305	Juvenile bud 3	54.984
	CRR073306	Third green 1	82.733
	CRR073307	Third green 2	53.074
	CRR073308	Third green 3	58.891
	CRR073309	Second white 1	8.842
	CRR073310	Second white 2	9.247
	CRR073311	Second white 3	6.143
	CRR073312	Silver flowering 1	1.982
	CRR073313	Silver flowering 2	1.303
	CRR073314	Silver flowering 3	1.088
	CRR073315	Gold flowering 1	11.101
	CRR073316	Gold flowering 2	12.960
	CRR073317	Gold flowering 3	8.079
	CRR073318	Tawny withering 1	49.306
	CRR073319	Tawny withering 2	34.468
	CRR073320	Tawny withering 3	77.267