Detail information of GWHGAAZE033882


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_008785246.10PREDICTED: pre-mRNA-splicing factor SLU7 [Phoenix dactylifera]
Swissprottr|Q9SHY8|SLU7A_ARATH0Pre-mRNA-splicing factor SLU7-A
trEMBLtr|A0A087HKT1|A0A087HKT1_ARAAL0Uncharacterized protein {ECO:0000313|EMBL:KFK42733.1}
TAIR10AT1G65660.14E-168Pre-mRNA splicing Prp18-interacting factor

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000145gene171932173218-
GWHAAZE00000145mRNA171932173218-
GWHAAZE00000145exon171932173218-
GWHAAZE00000145CDS171932173218-
Transcript Sequence

Network for GWHGAAZE033882

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF11708.9Slu7623295.80E-90
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12819SLU7 Spliceosome map03040

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf7.532
SRR3591706second leaf2.276
SRR3591707mature leaf3.498
SRR3591708Shoot apex4.619
SRR3591709Stem8.527
SRR3591710White floral bud4.047
SRR3591711White flower3.843
SRR3591712Green floral bud4.182
SRR3591713Yellow flower2.028
SRP173429 SRR8316895Juvenile bud stage 1.386
SRR8316896Juvenile bud stage 1.733
SRR8316897Juvenile bud stage 0.717
SRR8316894Third green stage 0.716
SRR8316900Third green stage 4.638
SRR8316901Third green stage 2.151
SRR8316898Complete white stage 1.127
SRR8316899Complete white stage 2.581
SRR8316903Complete white stage 0.821
SRR8316902Silver flowering stage0.335
SRR8316904Silver flowering stage0.552
SRR8316905Silver flowering stage0.092
SRR8316906Gold flowering stage 0.366
SRR8316907Gold flowering stage 0.450
SRR8316908Gold flowering stage 0.397
SRP132670SRR6706286Control3.320
SRR6706287Light intensity 50%3.607
SRR6706288Light intensity 20%4.288
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.645
CNS0095593Slightly white alabastrum(diploid) 21.983
CNS0095594Slightly white alabastrum(diploid) 32.245
CNS0095595Whole white alabastrum(diploid) 22.954
CNS0095596Whole white alabastrum(diploid) 33.486
CNS0095597Whole white alabastrum(diploid) 42.972
CNS0095598Silvery flower (diploied) 10.801
CNS0095599Silvery flower (diploied) 21.335
CNS0095600Silvery flower (diploied) 31.730
CNS0095601Golden flower (diploid) 11.268
CNS0095602Golden flower (diploid) 21.368
CNS0095603Golden flower (diploid) 30.845
CNS0095604Slightly white alabastrum(tetraploid) 11.795
CNS0095605Slightly white alabastrum(tetraploid) 20.949
CNS0095606Slightly white alabastrum(tetraploid) 30.969
CNS0095607Whole white alabastrum(tetraploid) 10.877
CNS0095608Whole white alabastrum(tetraploid) 20.950
CNS0095609Whole white alabastrum(tetraploid) 31.133
CNS0095610Silvery flower (tetraploid) 10.720
CNS0095611Silvery flower (tetraploid) 20.482
CNS0095612Silvery flower (tetraploid) 31.038
CNS0095613Golden flower (tetraploid) 10.209
CNS0095614Golden flower (tetraploid) 21.099
CNS0095615Golden flower (tetraploid) 30.533
CRA001975CRR073297Stem 13.667
CRR073298Stem 24.681
CRR073299Stem 34.097
CRR073300Leaf 14.759
CRR073301Leaf 24.574
CRR073302Leaf 36.402
CRR073303Juvenile bud 13.541
CRR073304Juvenile bud 25.357
CRR073305Juvenile bud 32.951
CRR073306Third green 11.305
CRR073307Third green 20.946
CRR073308Third green 30.861
CRR073309Second white 10.642
CRR073310Second white 20.792
CRR073311Second white 30.490
CRR073312Silver flowering 10.210
CRR073313Silver flowering 21.193
CRR073314Silver flowering 31.545
CRR073315Gold flowering 11.374
CRR073316Gold flowering 20.466
CRR073317Gold flowering 30.844
CRR073318Tawny withering 13.950
CRR073319Tawny withering 21.393
CRR073320Tawny withering 35.253