Gene detail

Detail information of GWHGAAZE033861

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002283435.1	4.684E-151	PREDICTED: GPI mannosyltransferase 2 [Vitis vinifera]
trEMBL	tr\|D7SLG2\|D7SLG2_VITVI	2E-151	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI16490.3}
TAIR10	AT1G11880.1	1E-112	transferases, transferring hexosyl groups

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000143	gene	226522	239304	+
GWHAAZE00000143	mRNA	226522	239304	+
GWHAAZE00000143	exon	226522	226688	+
GWHAAZE00000143	exon	231125	231320	+
GWHAAZE00000143	exon	233084	233262	+
GWHAAZE00000143	exon	234575	234825	+
GWHAAZE00000143	exon	237833	238008	+
GWHAAZE00000143	exon	238706	239304	+
GWHAAZE00000143	CDS	226522	226688	+
GWHAAZE00000143	CDS	231125	231320	+
GWHAAZE00000143	CDS	233084	233262	+
GWHAAZE00000143	CDS	234575	234825	+
GWHAAZE00000143	CDS	237833	238008	+
GWHAAZE00000143	CDS	238706	238876	+
GWHAAZE00000143	three_prime_UTR	238877	239304	+

Transcript Sequence
>GWHTAAZE033901 ATGGCAATAACATTCGCTTCCCTGGCATCGCTACGGCTATCGAAGAGAGCATCGTGTGGGACGGCGTCTATTTCGTCCGAATCGCGGAATGCGGGGGTTACGAATACGAGCAGTCCTAGGCCTTCTTGCCTCTTCTCCCTATCTCTTTTCTTTCCTCTCCACAACAGATACTCCGAGAGTTTGTATGCTCTTTTATCAATTGGAGGATTGTATCACCTAATGTCTGGTAAAAGCAATTATGCAACACTTTGGCTTGCTCTCTCTAGATCTGCAAGGTCAAATGGGGTGCTAAATGCTGGATATATTTGCTTTCAGACTATGCACCGAGCTTATGATGCTGTCTTTGTTAATAAGCGATATTACTTGGCAGTGCAGGTTCTTATCGCGGGAGCTTTATGCTTCTATTTGTGTTTTGTTCCATTTATTGCTTTTCAAGCATATGGCTACTATAATATTTGTCTTGGGCGTTCTGTGGAGGAAACTAGGCCGTGGTGCAAGGCAAGAATTCCTTTGCTGTACAATTTTATTCAGAGTCACTATTGGGGAGTAGGGTTTTTAAGATATTTCCAGCTAAAACAGTTGCCAAATTTCCTACTTGCTTTGCCAATATTGTCACTAACTGTTTGTTCAATAATCTACTATGCGAAGCTACGAAGGGAGGTTTTTCTCTCACTTGGTTTCCGAGCTTCTCCTGTGGATAAGAAGTCTGCTGCTGTGTTCTTTTCTGTGGGGACAGAGTCAAGATCAAAAAGTGAATCTGTTTTAGAGAAAGAAACTACTAAAATACGTGAAGAAGATCATGTTCTGAGACAGAGGAAACAGAATATAAAAGGAGAGGATCCTGCAACGCTTTCACTCGATAATGATTCAACACACAACAAGCAAGGATATTTGTCGGTTATTGTTCTGCCTTTTCTTTTGCACTTGGGATTCATGTCAGCCACAGCATTTTTTGTCATGCATGTGCAGGTTTCGACTCGGTTCTTATCGTCAAGCCCTCCTCTCTACTGGTTCGCCTCTTACGTGATGGTACATCCTAGTAGTAAAAGTAAGATGTGGGGATATTTTATCTGGGCCTACTGCGCGGCCTACATCCTTCTCGGCAGTATACTCTTCTCCAACTTCTATCCTTTCACTTGACTACTTTACTGGTTCCCCGTTAATCTTCTAGAGCTTATTTATGGCTTTCTTTTTCTGGGTTGATTGGTGGTAATCTCAAAAGTAATTGCTATTGCCACGGCAATGTGTTGTGCTTGAGGCATAATGCACAAGCATATACCTGCACACATTGCTCTGGTATTAAATATTCTGCTCTGGCAATAGCAATTGCCTACTCATATTTACCAATACGATTTGGAAGAGCTTTAGTGCAATGTACTGTGGTTTACGTAGCTGATCTGGGGTAGTTCTATCTACATGAAAAGGAAAAATTTATGTTAGAAAAGCTCATGTAGATAGTCGACGTGCTGTGCAGTTGTACATTATGCTTGAGGTGTAGTATCTTTAGCTTGGGTTGTACTTCAACGCAGATGTAATTTTTTTTAATTGAATAGTGAGGAACAACAATT

Network for GWHGAAZE033861

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04188.14	Mannosyl_trans2	36	379	3.50E-101

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K07542	PIGV	Metabolic pathways	map01100
K07542	PIGV	Glycosylphosphatidylinositol	map00563

Gene Ontology

GO term	Ontology	Name
GO:0006506	biological_process	GPI anchor biosynthetic process
GO:0004584	molecular_function	obsolete dolichyl-phosphate-mannose-glycolipid alpha-mannosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.323
	SRR3591706	second leaf	1.620
	SRR3591707	mature leaf	2.352
	SRR3591708	Shoot apex	2.638
	SRR3591709	Stem	3.234
	SRR3591710	White floral bud	1.871
	SRR3591711	White flower	2.278
	SRR3591712	Green floral bud	4.179
	SRR3591713	Yellow flower	2.902
SRP173429	SRR8316895	Juvenile bud stage	4.619
	SRR8316896	Juvenile bud stage	4.870
	SRR8316897	Juvenile bud stage	2.324
	SRR8316894	Third green stage	2.525
	SRR8316900	Third green stage	5.543
	SRR8316901	Third green stage	5.418
	SRR8316898	Complete white stage	2.007
	SRR8316899	Complete white stage	3.486
	SRR8316903	Complete white stage	3.485
	SRR8316902	Silver flowering stage	1.160
	SRR8316904	Silver flowering stage	2.019
	SRR8316905	Silver flowering stage	0.721
	SRR8316906	Gold flowering stage	2.675
	SRR8316907	Gold flowering stage	3.145
	SRR8316908	Gold flowering stage	2.253
SRP132670	SRR6706286	Control	2.455
	SRR6706287	Light intensity 50%	3.092
	SRR6706288	Light intensity 20%	3.242
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.793
	CNS0095593	Slightly white alabastrum(diploid) 2	4.661
	CNS0095594	Slightly white alabastrum(diploid) 3	4.872
	CNS0095595	Whole white alabastrum(diploid) 2	5.063
	CNS0095596	Whole white alabastrum(diploid) 3	6.074
	CNS0095597	Whole white alabastrum(diploid) 4	3.620
	CNS0095598	Silvery flower (diploied) 1	4.887
	CNS0095599	Silvery flower (diploied) 2	4.719
	CNS0095600	Silvery flower (diploied) 3	2.416
	CNS0095601	Golden flower (diploid) 1	4.765
	CNS0095602	Golden flower (diploid) 2	2.589
	CNS0095603	Golden flower (diploid) 3	2.495
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.302
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.243
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.068
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.336
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.591
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.992
	CNS0095610	Silvery flower (tetraploid) 1	0.816
	CNS0095611	Silvery flower (tetraploid) 2	0.808
	CNS0095612	Silvery flower (tetraploid) 3	0.594
	CNS0095613	Golden flower (tetraploid) 1	0.119
	CNS0095614	Golden flower (tetraploid) 2	0.406
	CNS0095615	Golden flower (tetraploid) 3	0.099
CRA001975	CRR073297	Stem 1	1.890
	CRR073298	Stem 2	2.429
	CRR073299	Stem 3	0.750
	CRR073300	Leaf 1	3.333
	CRR073301	Leaf 2	3.006
	CRR073302	Leaf 3	1.136
	CRR073303	Juvenile bud 1	0.890
	CRR073304	Juvenile bud 2	0.375
	CRR073305	Juvenile bud 3	1.312
	CRR073306	Third green 1	0.373
	CRR073307	Third green 2	0.264
	CRR073308	Third green 3	0.325
	CRR073309	Second white 1	0.331
	CRR073310	Second white 2	0.488
	CRR073311	Second white 3	0.660
	CRR073312	Silver flowering 1	0.295
	CRR073313	Silver flowering 2	0.399
	CRR073314	Silver flowering 3	0.111
	CRR073315	Gold flowering 1	1.380
	CRR073316	Gold flowering 2	0.893
	CRR073317	Gold flowering 3	0.478
	CRR073318	Tawny withering 1	1.300
	CRR073319	Tawny withering 2	1.209
	CRR073320	Tawny withering 3	0.445