Gene detail

Detail information of GWHGAAZE033856

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010246834.1	8.8489E-106	PREDICTED: protein RRP45A-like isoform X2 [Nelumbo nucifera]
COG	YP_184046.1	8E-33	exosome complex RNA-binding protein Rrp42
Swissprot	tr\|Q9M209\|CER7_ARATH	1E-90	Protein ECERIFERUM 7
trEMBL	tr\|V4UAY8\|V4UAY8_9ROSI	5E-105	Uncharacterized protein {ECO:0000313\|EMBL:ESR59411.1}
TAIR10	AT3G60500.3	1E-71	3'-5'-exoribonuclease family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000142	gene	2894	5573	+
GWHAAZE00000142	mRNA	2894	5573	+
GWHAAZE00000142	exon	2894	3030	+
GWHAAZE00000142	exon	3794	3840	+
GWHAAZE00000142	exon	3948	4002	+
GWHAAZE00000142	exon	4547	4642	+
GWHAAZE00000142	exon	4746	4806	+
GWHAAZE00000142	exon	5244	5306	+
GWHAAZE00000142	exon	5433	5573	+
GWHAAZE00000142	CDS	2894	3030	+
GWHAAZE00000142	CDS	3794	3840	+
GWHAAZE00000142	CDS	3948	4002	+
GWHAAZE00000142	CDS	4547	4642	+
GWHAAZE00000142	CDS	4746	4806	+
GWHAAZE00000142	CDS	5244	5306	+
GWHAAZE00000142	CDS	5433	5573	+

Transcript Sequence
>GWHTAAZE033896 ATGGAGCAAAGACTAGCTAATACCTGGCGGATTACAGTGAATGAGAAGAAATTCATAGAGACTGCATTACTTTCTGACCTAAGAGTTGATGGTCGGCGTCCATTTGACTATAGACGACTAACTATCATGTTTGGTAGGGAAGATGGCTCAGCTGAGGTGCAGCTTGGCCAAACTCATGTTATGGGTCGTCCTGGAGAATCTGCTGTGGAATTGGGACGCATTATAGATCGTGGTTTAAGGGAAAGCAGAGCAGTGGACACAGAATCACTTTGTGTTGTTGCAGGGAAGTTTGTATGGTCCATCCGTATTGATCTTCATATTCTAGACAATGGGGGAAATCTTGTTGATGCTGCCAATATTGCTGCTTTGGCATCTCTCTACGCCCGAGGCCTGAATGTAAGGGAGCCTCTTCCGCTGATAATACATCATCTCCCTGTGGCTGTAACCTTTGCATTTTTGGTGATTGATCCTACCCATTATGAAGAGGCTGTCATGGGAGGAAGAATGACTGCTACACTTAATACGAATGGTGATGTTTGTGCTATTCAAAAAGCTGGAGGAGAGGGTGTTATGCAAAGTGTTATCATGCAGTGTTTATGA

Network for GWHGAAZE033856

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01138.22	RNase_PH	62	128	2.50E-08
PF03725.16	RNase_PH_C	143	199	7.80E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03678	RRP45, EXOSC9	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0006396	biological_process	RNA processing
GO:0000178	cellular_component	exosome (RNase complex)

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.844
	SRR3591706	second leaf	2.524
	SRR3591707	mature leaf	2.647
	SRR3591708	Shoot apex	5.980
	SRR3591709	Stem	3.171
	SRR3591710	White floral bud	3.200
	SRR3591711	White flower	3.710
	SRR3591712	Green floral bud	4.674
	SRR3591713	Yellow flower	3.422
SRP173429	SRR8316895	Juvenile bud stage	1.304
	SRR8316896	Juvenile bud stage	1.279
	SRR8316897	Juvenile bud stage	1.219
	SRR8316894	Third green stage	0.366
	SRR8316900	Third green stage	2.559
	SRR8316901	Third green stage	1.878
	SRR8316898	Complete white stage	0.435
	SRR8316899	Complete white stage	2.396
	SRR8316903	Complete white stage	0.366
	SRR8316902	Silver flowering stage	0.728
	SRR8316904	Silver flowering stage	0.691
	SRR8316905	Silver flowering stage	0.435
	SRR8316906	Gold flowering stage	0.499
	SRR8316907	Gold flowering stage	0.911
	SRR8316908	Gold flowering stage	1.844
SRP132670	SRR6706286	Control	1.212
	SRR6706287	Light intensity 50%	1.122
	SRR6706288	Light intensity 20%	1.739
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.305
	CNS0095593	Slightly white alabastrum(diploid) 2	0.363
	CNS0095594	Slightly white alabastrum(diploid) 3	0.166
	CNS0095595	Whole white alabastrum(diploid) 2	0.436
	CNS0095596	Whole white alabastrum(diploid) 3	0.452
	CNS0095597	Whole white alabastrum(diploid) 4	0.288
	CNS0095598	Silvery flower (diploied) 1	0.788
	CNS0095599	Silvery flower (diploied) 2	0.332
	CNS0095600	Silvery flower (diploied) 3	0.633
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.272
	CNS0095603	Golden flower (diploid) 3	1.077
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.718
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.266
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.265
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.276
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.274
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.088
	CNS0095610	Silvery flower (tetraploid) 1	1.377
	CNS0095611	Silvery flower (tetraploid) 2	1.161
	CNS0095612	Silvery flower (tetraploid) 3	1.724
	CNS0095613	Golden flower (tetraploid) 1	0.907
	CNS0095614	Golden flower (tetraploid) 2	1.045
	CNS0095615	Golden flower (tetraploid) 3	1.727
CRA001975	CRR073297	Stem 1	1.666
	CRR073298	Stem 2	0.897
	CRR073299	Stem 3	2.236
	CRR073300	Leaf 1	1.022
	CRR073301	Leaf 2	1.679
	CRR073302	Leaf 3	1.630
	CRR073303	Juvenile bud 1	1.831
	CRR073304	Juvenile bud 2	0.966
	CRR073305	Juvenile bud 3	1.059
	CRR073306	Third green 1	0.579
	CRR073307	Third green 2	0.300
	CRR073308	Third green 3	0.180
	CRR073309	Second white 1	0.439
	CRR073310	Second white 2	0.937
	CRR073311	Second white 3	1.076
	CRR073312	Silver flowering 1	0.382
	CRR073313	Silver flowering 2	1.889
	CRR073314	Silver flowering 3	0.254
	CRR073315	Gold flowering 1	1.700
	CRR073316	Gold flowering 2	2.279
	CRR073317	Gold flowering 3	0.639
	CRR073318	Tawny withering 1	2.251
	CRR073319	Tawny withering 2	0.388
	CRR073320	Tawny withering 3	1.032