Gene detail

Detail information of GWHGAAZE033849

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006392436.1	0	hypothetical protein EUTSA_v10023481mg [Eutrema salsugineum]
Swissprot	tr\|O81919\|CALR_BETVU	0	Calreticulin (Precursor)
trEMBL	tr\|V4KII7\|V4KII7_EUTSA	0	Uncharacterized protein {ECO:0000313\|EMBL:ESQ29722.1}
TAIR10	AT1G09210.1	9E-152	calreticulin 1b

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000141	gene	1099421	1105430	+
GWHAAZE00000141	mRNA	1099421	1105430	+
GWHAAZE00000141	exon	1099421	1099639	+
GWHAAZE00000141	exon	1101276	1101321	+
GWHAAZE00000141	exon	1101420	1101527	+
GWHAAZE00000141	exon	1101683	1101875	+
GWHAAZE00000141	exon	1102347	1102605	+
GWHAAZE00000141	exon	1102842	1102889	+
GWHAAZE00000141	exon	1103305	1103391	+
GWHAAZE00000141	exon	1103478	1103535	+
GWHAAZE00000141	exon	1103624	1103691	+
GWHAAZE00000141	exon	1103767	1103862	+
GWHAAZE00000141	exon	1103952	1103996	+
GWHAAZE00000141	exon	1104361	1104390	+
GWHAAZE00000141	exon	1104538	1104627	+
GWHAAZE00000141	exon	1105419	1105430	+
GWHAAZE00000141	CDS	1099421	1099639	+
GWHAAZE00000141	CDS	1101276	1101321	+
GWHAAZE00000141	CDS	1101420	1101527	+
GWHAAZE00000141	CDS	1101683	1101875	+
GWHAAZE00000141	CDS	1102347	1102605	+
GWHAAZE00000141	CDS	1102842	1102889	+
GWHAAZE00000141	CDS	1103305	1103391	+
GWHAAZE00000141	CDS	1103478	1103535	+
GWHAAZE00000141	CDS	1103624	1103691	+
GWHAAZE00000141	CDS	1103767	1103862	+
GWHAAZE00000141	CDS	1103952	1103996	+
GWHAAZE00000141	CDS	1104361	1104390	+
GWHAAZE00000141	CDS	1104538	1104627	+
GWHAAZE00000141	CDS	1105419	1105430	+

Transcript Sequence
>GWHTAAZE033889 ATGAGCAGAACCCGCGTATATATATACACCCCTTGCGCCACCTTCACTCTCATATTTCTGATTTCTCAGTCTCCTCTCTCTCTAGACATGGCGATACTCAGACGAAACCCTAATTTTCTCTCTCTCATCTTCTTCTCTGTCATTGCGATCGTTTCTGCGGAAGTTTTCTTCGAAGAGCGTTTCGACGGTACTTCTCTCAGTCTCTGGATTGTGTATTTTCATGTGGCATCTACTAAACAAAGTTGGGTTATTGTCTTGTACATAGATGGATGGGAAAACCAATGGGTTGTATCTGACTGGAAGAAAGATGAGAACACGGCTGGAGTCTGGAATTATACTTCTGGTAAATGGAACGGGGACCCCAATGATAAAGGTATCCAGACCAGTGAAGACTACAGATTTTATGCTATATCTGCTCAATTCCCTGAATTCAGCAACAAGGATAAGACATTAGTTTTCCAATTTTCTGTCAAGCATGAACAGAAGCTTGACTGTGGCGGCGGCTACATGAAGTTGCTCAGTGGTGAAGTTGATCAGAAGATATTCGGTGGTGATACTCCATACAGTATCATGTTTGGACCTGATATCTGTGGCTTTGCTACGAAGAAAGTCCATGCAATTCTTACATACAACGACACAAATCACTTGATTAAGAAGGATGTCCCTTGTGAGACTGACCAGTTGACTCATGTATATACTTTCATCCTTCGTCCTGATGCTACCTACAGCATCCTCATTGACAATCAGGAGAAGCAGAGTGGTAGTTTGTACACGGATTGGGATCTTCTCCTTCCAAGGAAAATCAAGGATCCGGATTCCAAAAAAGGTTATGATGATGTACCAAAGGAGATACCAGACCCGGATGCAAAAAAGCCTGAAGATTGGGATGATGAAGAAGATGGTGCGTGGACACCCCCAACTATTCCAAACCCAGAGTACAAGGGTCCATGGAAGCAAAAGGAAATGAAGAACCCCAACTACAAAGGAAAGTGGAAAGCACCCAAGATTGACAATCCAGATTTTAAGGATGACCCTGATCTATATGTTTACCCAAAATTGAAGTATGTAGGCATAGAATTGTGGCAGGTGAAATCTGGAACCCTGTTTGACAATGTGTTGATCTGTGATGACCCGGAGTATGCCAAGAAACTGGCCGAAGAAACTTGGGGCAAGCAAAAAGATGCTGAGAAGGCGGCTTTTGACGAGGCGGAAAAGAAGAAAGAGGAGGAATCAAAGAGTGATGCAGCTGATTCTGACGCTGAAGATGAAGATGAGGATGCCGAAGAAGCAGATTCTGACAAGGAAGATGACGCTGATAATGCTGGTCCCATTGAGGATGATGTTAAGGATGAACTGTAG

Network for GWHGAAZE033849

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00262.19	Calreticulin	89	299	8.70E-44
PF00262.19	Calreticulin	301	374	1.70E-21

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08057	CALR	Protein processing in endoplasmic reticulum	map04141
		Phagosome	map04145
		Antigen processing and presentation	map04612

Gene Ontology

GO term	Ontology	Name
GO:0006457	biological_process	protein folding
GO:0005783	cellular_component	endoplasmic reticulum
GO:0005509	molecular_function	calcium ion binding
GO:0051082	molecular_function	unfolded protein binding
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	1.478
	SRR3591706	second leaf	0.614
	SRR3591707	mature leaf	0.170
	SRR3591708	Shoot apex	4.554
	SRR3591709	Stem	0.313
	SRR3591710	White floral bud	8.492
	SRR3591711	White flower	3.881
	SRR3591712	Green floral bud	6.114
	SRR3591713	Yellow flower	30.315
SRP173429	SRR8316895	Juvenile bud stage	47.646
	SRR8316896	Juvenile bud stage	78.717
	SRR8316897	Juvenile bud stage	32.058
	SRR8316894	Third green stage	25.679
	SRR8316900	Third green stage	19.078
	SRR8316901	Third green stage	28.377
	SRR8316898	Complete white stage	1.086
	SRR8316899	Complete white stage	1.284
	SRR8316903	Complete white stage	0.705
	SRR8316902	Silver flowering stage	3.775
	SRR8316904	Silver flowering stage	3.543
	SRR8316905	Silver flowering stage	0.960
	SRR8316906	Gold flowering stage	6.873
	SRR8316907	Gold flowering stage	9.701
	SRR8316908	Gold flowering stage	4.727
SRP132670	SRR6706286	Control	7.178
	SRR6706287	Light intensity 50%	6.341
	SRR6706288	Light intensity 20%	4.430
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	58.695
	CNS0095593	Slightly white alabastrum(diploid) 2	34.263
	CNS0095594	Slightly white alabastrum(diploid) 3	91.786
	CNS0095595	Whole white alabastrum(diploid) 2	23.356
	CNS0095596	Whole white alabastrum(diploid) 3	32.647
	CNS0095597	Whole white alabastrum(diploid) 4	11.047
	CNS0095598	Silvery flower (diploied) 1	2.774
	CNS0095599	Silvery flower (diploied) 2	1.157
	CNS0095600	Silvery flower (diploied) 3	1.256
	CNS0095601	Golden flower (diploid) 1	1.285
	CNS0095602	Golden flower (diploid) 2	18.429
	CNS0095603	Golden flower (diploid) 3	17.564
	CNS0095604	Slightly white alabastrum(tetraploid) 1	60.496
	CNS0095605	Slightly white alabastrum(tetraploid) 2	54.698
	CNS0095606	Slightly white alabastrum(tetraploid) 3	5.868
	CNS0095607	Whole white alabastrum(tetraploid) 1	29.984
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.786
	CNS0095609	Whole white alabastrum(tetraploid) 3	31.333
	CNS0095610	Silvery flower (tetraploid) 1	9.593
	CNS0095611	Silvery flower (tetraploid) 2	4.509
	CNS0095612	Silvery flower (tetraploid) 3	12.680
	CNS0095613	Golden flower (tetraploid) 1	7.488
	CNS0095614	Golden flower (tetraploid) 2	6.815
	CNS0095615	Golden flower (tetraploid) 3	17.699
CRA001975	CRR073297	Stem 1	33.358
	CRR073298	Stem 2	27.027
	CRR073299	Stem 3	38.436
	CRR073300	Leaf 1	10.416
	CRR073301	Leaf 2	11.481
	CRR073302	Leaf 3	14.526
	CRR073303	Juvenile bud 1	2.285
	CRR073304	Juvenile bud 2	1.955
	CRR073305	Juvenile bud 3	1.740
	CRR073306	Third green 1	2.837
	CRR073307	Third green 2	3.088
	CRR073308	Third green 3	2.063
	CRR073309	Second white 1	16.916
	CRR073310	Second white 2	10.198
	CRR073311	Second white 3	14.434
	CRR073312	Silver flowering 1	62.451
	CRR073313	Silver flowering 2	102.724
	CRR073314	Silver flowering 3	70.818
	CRR073315	Gold flowering 1	0.108
	CRR073316	Gold flowering 2	0.202
	CRR073317	Gold flowering 3	0.087
	CRR073318	Tawny withering 1	0.676
	CRR073319	Tawny withering 2	0.504
	CRR073320	Tawny withering 3	2.174