Detail information of GWHGAAZE033824


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010656128.15.2668E-118PREDICTED: uncharacterized protein LOC100256088 [Vitis vinifera]
trEMBLtr|F6HGP2|F6HGP2_VITVI1E-106Putative uncharacterized protein {ECO:0000313|EMBL:CCB51407.1}
TAIR10AT5G09380.15E-56RNA polymerase III RPC4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000141gene267354271393-
GWHAAZE00000141mRNA267354271393-
GWHAAZE00000141exon271359271393-
GWHAAZE00000141exon270290270358-
GWHAAZE00000141exon270135270193-
GWHAAZE00000141exon269983270040-
GWHAAZE00000141exon269828269867-
GWHAAZE00000141exon269272269361-
GWHAAZE00000141exon269137269183-
GWHAAZE00000141exon268826268886-
GWHAAZE00000141exon268458268549-
GWHAAZE00000141exon268139268375-
GWHAAZE00000141exon267354267506-
GWHAAZE00000141five_prime_UTR271359271393-
GWHAAZE00000141five_prime_UTR270338270358-
GWHAAZE00000141CDS270290270337-
GWHAAZE00000141CDS270135270193-
GWHAAZE00000141CDS269983270040-
GWHAAZE00000141CDS269828269867-
GWHAAZE00000141CDS269272269361-
GWHAAZE00000141CDS269137269183-
GWHAAZE00000141CDS268826268886-
GWHAAZE00000141CDS268458268549-
GWHAAZE00000141CDS268139268375-
GWHAAZE00000141CDS267354267506-
Transcript Sequence

Network for GWHGAAZE033824

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF05132.15RNA_pol_Rpc41732841.20E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03026RPC4, POLR3D RNA polymerase map03020
Cytosolic DNA-sensing pathwaymap04623

Gene Ontology

GO term OntologyName
GO:0006383biological_processtranscription by RNA polymerase III
GO:0005666cellular_componentRNA polymerase III complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.862
SRR3591706second leaf0.802
SRR3591707mature leaf0.526
SRR3591708Shoot apex4.822
SRR3591709Stem2.592
SRR3591710White floral bud1.643
SRR3591711White flower2.735
SRR3591712Green floral bud6.351
SRR3591713Yellow flower1.519
SRP173429 SRR8316895Juvenile bud stage 13.281
SRR8316896Juvenile bud stage 15.993
SRR8316897Juvenile bud stage 4.929
SRR8316894Third green stage 3.832
SRR8316900Third green stage 7.179
SRR8316901Third green stage 7.491
SRR8316898Complete white stage 0.409
SRR8316899Complete white stage 4.733
SRR8316903Complete white stage 0.271
SRR8316902Silver flowering stage0.777
SRR8316904Silver flowering stage0.467
SRR8316905Silver flowering stage0.190
SRR8316906Gold flowering stage 1.078
SRR8316907Gold flowering stage 1.260
SRR8316908Gold flowering stage 1.901
SRP132670SRR6706286Control4.679
SRR6706287Light intensity 50%6.514
SRR6706288Light intensity 20%7.513
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.751
CNS0095593Slightly white alabastrum(diploid) 25.234
CNS0095594Slightly white alabastrum(diploid) 311.851
CNS0095595Whole white alabastrum(diploid) 23.979
CNS0095596Whole white alabastrum(diploid) 36.612
CNS0095597Whole white alabastrum(diploid) 45.472
CNS0095598Silvery flower (diploied) 11.159
CNS0095599Silvery flower (diploied) 21.376
CNS0095600Silvery flower (diploied) 31.158
CNS0095601Golden flower (diploid) 10.521
CNS0095602Golden flower (diploid) 20.610
CNS0095603Golden flower (diploid) 30.409
CNS0095604Slightly white alabastrum(tetraploid) 15.188
CNS0095605Slightly white alabastrum(tetraploid) 26.755
CNS0095606Slightly white alabastrum(tetraploid) 34.865
CNS0095607Whole white alabastrum(tetraploid) 13.388
CNS0095608Whole white alabastrum(tetraploid) 24.759
CNS0095609Whole white alabastrum(tetraploid) 37.285
CNS0095610Silvery flower (tetraploid) 10.969
CNS0095611Silvery flower (tetraploid) 21.078
CNS0095612Silvery flower (tetraploid) 30.685
CNS0095613Golden flower (tetraploid) 10.180
CNS0095614Golden flower (tetraploid) 20.860
CNS0095615Golden flower (tetraploid) 30.059
CRA001975CRR073297Stem 15.906
CRR073298Stem 25.276
CRR073299Stem 33.099
CRR073300Leaf 13.666
CRR073301Leaf 26.068
CRR073302Leaf 34.545
CRR073303Juvenile bud 15.729
CRR073304Juvenile bud 21.475
CRR073305Juvenile bud 32.509
CRR073306Third green 10.090
CRR073307Third green 20.000
CRR073308Third green 30.446
CRR073309Second white 10.295
CRR073310Second white 20.541
CRR073311Second white 30.964
CRR073312Silver flowering 10.515
CRR073313Silver flowering 20.221
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.621
CRR073316Gold flowering 21.478
CRR073317Gold flowering 30.870
CRR073318Tawny withering 13.834
CRR073319Tawny withering 23.134
CRR073320Tawny withering 33.585