Gene detail

Detail information of GWHGAAZE033817

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009787251.1	0	PREDICTED: protein ECERIFERUM 1-like isoform X1 [Nicotiana sylvestris]
COG	YP_006918135.1	3E-13	hypothetical protein M5M_16375
Swissprot	tr\|F4HVY0\|CER1_ARATH	0	Protein ECERIFERUM 1
trEMBL	tr\|M1D7C0\|M1D7C0_SOLTU	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400083908}
TAIR10	AT1G02205.2	7E-168	Fatty acid hydroxylase superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000141	gene	82902	88503	+
GWHAAZE00000141	mRNA	82902	88503	+
GWHAAZE00000141	exon	82902	83088	+
GWHAAZE00000141	exon	83357	83576	+
GWHAAZE00000141	exon	84744	85119	+
GWHAAZE00000141	exon	85299	85413	+
GWHAAZE00000141	exon	85502	85698	+
GWHAAZE00000141	exon	87014	87106	+
GWHAAZE00000141	exon	87806	87979	+
GWHAAZE00000141	exon	88282	88503	+
GWHAAZE00000141	CDS	82902	83088	+
GWHAAZE00000141	CDS	83357	83576	+
GWHAAZE00000141	CDS	84744	85119	+
GWHAAZE00000141	CDS	85299	85413	+
GWHAAZE00000141	CDS	85502	85698	+
GWHAAZE00000141	CDS	87014	87106	+
GWHAAZE00000141	CDS	87806	87979	+
GWHAAZE00000141	CDS	88282	88503	+

Transcript Sequence
>GWHTAAZE033857 ATGACAATGGATAGAGCATTTCACTTGCCCTTATGGAGAACTGATGGTATTATAATCACAATATTGCTTCATATCGGACCGGTGGAGTTCCTTTACTATTGGCTTCACAGGGCATTGCACCACCACTATCTCTACTCTCGCTACCATTCCCACCACCACTCCTCCATTGCCACCGAGCCTATTTCTTCTGTTACGCATCCATTTGCAGAGTTATTATCATATTTTTTGCTGTTTGCAATGCCAATGATTACAACAGTGTTAAGTGGAACTGCTTCAATGGTGTCCCTGGCTGGCTATATCACTTACATTGATCTAATGAACAACATGGGTCATTGCAATTTTGAGTTTATTCCAAACACCCTCTTCTCCTTCTTTCCTCCTCTAAAGTACTTGATGTATACCCCCTCATACCACTCTCTTCATCACACTCAATTTCGGACTAATTACTCACTCTTCATGCCGATTTACGACTACATCTATGGTACCATGGACAAGTCTGCTGATACATTGCATGAAGATTCACTCAAAAGACAAGAAGAGCTACCGGATGTCGTTCATTTGACGCATATGACCACGCCAGATTCAATATATCAACTCCGGATAGGGTTTGCCTCTTTCGCCTTGAAACCCCACACATCCAAATGGTATATATGGCTAATGTGGCCTGTGACACATTGGTCCATGATCATGACATGCCTCTATGGTCGTACGTTCACCATAGAGAGGAATGCATTTAAAAAACTCAATTTACATTCTTGGGCAATACCACGATACAATATACATTACTTGCATGAATGGGAAAGAGGTAAAATAAATCAGTTGATTGAAGAGGCTATACTTGAAGCAGAGGCTAGAGGCACTAAGGTGTTGAGTCTAGGTCTCTTGAACCAGGCAAGTGAATTGAATGGTAATGGGGAACTTTACATAAAAAGGTACCCTGAATTGAGAGTGAAGGTGGTGGATGGAAGTAGTTTGGCAGTTGCAATTGTTATTAACAAGATTCCAAAAGGAACGACACAAGTTCTACTTGTAGCCATACAACAATCTAAGGTTGCCTCTTCTATTGCCTCTGCATTATGCCAATGTGGTATTCAGGTGGTTACATTATTCAAAGAAGAATATGAGAAGCTGAAGCCGACCACCAAGTCTGAAAATCATTTGCTACTCTCAAAAAGTTATACTCAGAAGATATGGATAGTTGGAGATGGATTGAGTGAAGAGGAACAAATGAAGGCACCAAAAGGAACAATATTCATTCCATTCTCACAGTTCCCTCCAAAGAAAGTACGCAAAGATTGCTTGTACCACTACACACCTTCAATGTTGGCCCCCAATTCTCTTGAAAATCTGCACTCTTGTGAGAATTGGCTTCCAAGAAGAGTGATGAGTGCATGGAGGGTAGCGGGAATAGTGCATAGCTTAGAAGGATGGAATGAAAATGAAAGTGGGGACACCATTTTCAATATTGATAAAGTTTGGCAAGCCACTCTTAAGCATGGCTTTCAACCTTTAGTTAATTATTACTCTCATTAATTAAGTAATGACTCTACGTAATTACTGATTTCAGCTACTTTGGGTTTGTAA

Network for GWHGAAZE033817

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04116.14	FA_hydroxylase	23	162	9.60E-22
PF12076.9	Wax2_C	345	503	4.50E-72

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15404	K15404, CER1	Biosynthesis of secondary metabolites	map01110
K15404	K15404, CER1	Cutin, suberine and wax biosynthesis	map00073

Gene Ontology

GO term	Ontology	Name
GO:0008610	biological_process	lipid biosynthetic process
GO:0055114	biological_process	oxidation-reduction process
GO:0005506	molecular_function	iron ion binding
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.460
	SRR3591707	mature leaf	4.344
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.104
	SRR3591710	White floral bud	0.860
	SRR3591711	White flower	1.117
	SRR3591712	Green floral bud	0.454
	SRR3591713	Yellow flower	0.780
SRP173429	SRR8316895	Juvenile bud stage	0.707
	SRR8316896	Juvenile bud stage	2.041
	SRR8316897	Juvenile bud stage	0.535
	SRR8316894	Third green stage	0.211
	SRR8316900	Third green stage	0.713
	SRR8316901	Third green stage	0.151
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.186
	SRR8316903	Complete white stage	0.065
	SRR8316902	Silver flowering stage	0.124
	SRR8316904	Silver flowering stage	0.180
	SRR8316905	Silver flowering stage	0.063
	SRR8316906	Gold flowering stage	0.157
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.064
SRP132670	SRR6706286	Control	0.035
	SRR6706287	Light intensity 50%	0.016
	SRR6706288	Light intensity 20%	0.000
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.268
	CNS0095593	Slightly white alabastrum(diploid) 2	0.040
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.089
	CNS0095597	Whole white alabastrum(diploid) 4	0.005
	CNS0095598	Silvery flower (diploied) 1	0.046
	CNS0095599	Silvery flower (diploied) 2	0.315
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.247
	CNS0095602	Golden flower (diploid) 2	0.070
	CNS0095603	Golden flower (diploid) 3	0.040
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.129
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.526
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.030
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.021
	CRR073298	Stem 2	0.002
	CRR073299	Stem 3	0.063
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	68.099
	CRR073316	Gold flowering 2	93.848
	CRR073317	Gold flowering 3	96.184
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.004
	CRR073320	Tawny withering 3	0.020