Gene detail

Detail information of GWHGAAZE033808

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002321105.1	0	DNA topoisomerase family protein [Populus trichocarpa]
COG	YP_008432516.1	2E-48	hypothetical protein N186_05815
Swissprot	tr\|F4ISQ7\|TOP3B_ARATH	0	DNA topoisomerase 3-beta
trEMBL	tr\|B9IAB5\|B9IAB5_POPTR	0	DNA topoisomerase family protein {ECO:0000313\|EMBL:EEE99420.1}
TAIR10	AT2G32000.1	0	DNA topoisomerase, type IA, core

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000139	gene	346063	356785	+
GWHAAZE00000139	mRNA	346063	356785	+
GWHAAZE00000139	exon	346063	346076	+
GWHAAZE00000139	exon	346365	346643	+
GWHAAZE00000139	exon	349097	349265	+
GWHAAZE00000139	exon	350079	350207	+
GWHAAZE00000139	exon	351912	352124	+
GWHAAZE00000139	exon	353670	353849	+
GWHAAZE00000139	exon	356144	356785	+
GWHAAZE00000139	CDS	346063	346076	+
GWHAAZE00000139	CDS	346365	346643	+
GWHAAZE00000139	CDS	349097	349265	+
GWHAAZE00000139	CDS	350079	350207	+
GWHAAZE00000139	CDS	351912	352124	+
GWHAAZE00000139	CDS	353670	353849	+
GWHAAZE00000139	CDS	356144	356785	+

Transcript Sequence
>GWHTAAZE033848 ATGGCAGACTACTGCTATCCACGCACAGAAAGCACAGCATACCCTTCGACGTTTGATTTTAGAGGCGCACTTGGAGCACTAGCAAATAATCCCGTATGGGGCAATCTCGTGCAAACACTCTTAGCTGATGGTTATAATAAGCCAAAATCAGGGACAGATGCTGGTGACCACCCTCCCATAACCCCAATGCGATCTGCTTCAGAGGATATGCTTGGCTCTGATGCTTGGAGACTGTACCAGTATGTCTGTCAACATTTTCTTGGTACCCTCTCTCCAGACTGCAAATATAAAAGGACAAAGATTGAGTTTTCAGTTGCTGGAGAATTCTTTCATTGTGTGGGCCAGCAGGTTACGGTCAAAGGATTTACGGCAATTATGCCATGGTTGGCAGTAAATGAGAAGAATCTTCCTCAGTTTAGTAAAGGGGAGAAAATAGAAATTTCAAATGTTGAGCTATATGAGGGCAACACTGCGCCACCAGATTACCTTACTGAAAGTGAGCTGATCTCTTTAATGGAAAAGCATGGAATAGGAACAGACGCGTCCATTCCTGTTCATATTAACAACATAAGTGAACGCAACTATGTACAGGTTCAGGCTGGAAGGAAGTTGGTACCAACTGCTTTAGGTATCAGTCTGATTAGAGGGTATCAATGTATTGATCCAGATCTCTGTTTGCCTGATATTCGGAGTTTCATAGAGCAACAAATAACTCTTGTTTCCAAAGGTCAAGCCGATCATTCTCTTGTTGTACACCACTCACTTGAGCAATTCAAGCGCAAGTTCAGTTACTTTGTTAAGCAGATTGAAAACATGGATGCGTTGTTTGAAGCTCAGTTTTCTCCCCTCTCAGACTCTGGACGGTTGCTAAGTAAATGTGGAAAATGCTTGCGTTACATGAAGTACATCTCTAGCCTGCCTTCACGGTTATTCTGTGGTACTTGTGAGGAGGTTTACTATGTTCCTCAAAAGGGCACTATCAAGCTGTACAAGGAACTTACTTGCCCTCTGGATAACTTTGAACTTTTAATCTTCTCCCTGGCTGGTCCGGAGGGAAAATCGTTCCCTCTCTGCCCTTACTGTTACAACAACCCGCCCTTCGAGGGCATAGACACATTCTTTGGTGCAACCAAACCCGGTGGAGCCAACAAGCTCGGCAAAGGAGCCGGAATGCCGTGTTTCCTCTGCCCGCATCCAACGTGCCGCCACTCTCTCATAGCCCAAGGCGTATGTGCGTGCCCTGAGTGCACCGGGACCCTAGTCCTTGACCCGGTTAGTGCCCCTAGGTGGCGGCTCTATTGCAACATGTGCAATTGCCTTGTTTTTCTACCTGAGGGAGCCCACCGGATATCCACAACTAAGGACCGGTGCACCGAGTGCGACTCCACGATTATTGAGGTAGACTTTAACAAGAAGACCACGCCTCTCGAAGGTGGAGCCACTTTGCATGTTGGGTGTATTCTTTGTGACGATTTGCTTCATTCACTTGTGGAGATGAAACATGGGAAGTCGTTTTTTAAGCGAACCGGTGGAAGGGGAAGAGGAAGAGGGAGGGGGAGAGGGAGGGGAAGGGGACGCGGTGGGAGGAGAGAACTAGACCCGAGAATGAGTTTTCGAGATTTTTGA

Network for GWHGAAZE033808

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01131.21	Topoisom_bac	6	251	6.70E-60

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03165	TOP3	Homologous recombination	map03440
K03165	TOP3	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0006265	biological_process	DNA topological change
GO:0003677	molecular_function	DNA binding
GO:0003916	molecular_function	DNA topoisomerase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	12.865
	SRR3591706	second leaf	7.403
	SRR3591707	mature leaf	6.555
	SRR3591708	Shoot apex	14.404
	SRR3591709	Stem	14.423
	SRR3591710	White floral bud	14.544
	SRR3591711	White flower	13.368
	SRR3591712	Green floral bud	13.251
	SRR3591713	Yellow flower	10.627
SRP173429	SRR8316895	Juvenile bud stage	8.770
	SRR8316896	Juvenile bud stage	10.802
	SRR8316897	Juvenile bud stage	5.975
	SRR8316894	Third green stage	3.631
	SRR8316900	Third green stage	10.763
	SRR8316901	Third green stage	9.359
	SRR8316898	Complete white stage	2.991
	SRR8316899	Complete white stage	11.569
	SRR8316903	Complete white stage	5.447
	SRR8316902	Silver flowering stage	2.462
	SRR8316904	Silver flowering stage	3.941
	SRR8316905	Silver flowering stage	1.917
	SRR8316906	Gold flowering stage	5.091
	SRR8316907	Gold flowering stage	5.905
	SRR8316908	Gold flowering stage	5.466
SRP132670	SRR6706286	Control	7.702
	SRR6706287	Light intensity 50%	8.348
	SRR6706288	Light intensity 20%	8.512
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	9.453
	CNS0095593	Slightly white alabastrum(diploid) 2	6.749
	CNS0095594	Slightly white alabastrum(diploid) 3	7.459
	CNS0095595	Whole white alabastrum(diploid) 2	8.291
	CNS0095596	Whole white alabastrum(diploid) 3	7.832
	CNS0095597	Whole white alabastrum(diploid) 4	5.832
	CNS0095598	Silvery flower (diploied) 1	9.370
	CNS0095599	Silvery flower (diploied) 2	9.261
	CNS0095600	Silvery flower (diploied) 3	8.487
	CNS0095601	Golden flower (diploid) 1	8.442
	CNS0095602	Golden flower (diploid) 2	10.662
	CNS0095603	Golden flower (diploid) 3	8.885
	CNS0095604	Slightly white alabastrum(tetraploid) 1	10.937
	CNS0095605	Slightly white alabastrum(tetraploid) 2	8.521
	CNS0095606	Slightly white alabastrum(tetraploid) 3	15.384
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.316
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.909
	CNS0095609	Whole white alabastrum(tetraploid) 3	12.722
	CNS0095610	Silvery flower (tetraploid) 1	11.228
	CNS0095611	Silvery flower (tetraploid) 2	10.829
	CNS0095612	Silvery flower (tetraploid) 3	12.241
	CNS0095613	Golden flower (tetraploid) 1	5.093
	CNS0095614	Golden flower (tetraploid) 2	6.899
	CNS0095615	Golden flower (tetraploid) 3	4.441
CRA001975	CRR073297	Stem 1	12.073
	CRR073298	Stem 2	11.263
	CRR073299	Stem 3	9.801
	CRR073300	Leaf 1	11.121
	CRR073301	Leaf 2	12.251
	CRR073302	Leaf 3	10.144
	CRR073303	Juvenile bud 1	11.134
	CRR073304	Juvenile bud 2	9.409
	CRR073305	Juvenile bud 3	13.008
	CRR073306	Third green 1	3.625
	CRR073307	Third green 2	2.936
	CRR073308	Third green 3	3.026
	CRR073309	Second white 1	3.674
	CRR073310	Second white 2	6.001
	CRR073311	Second white 3	4.153
	CRR073312	Silver flowering 1	2.971
	CRR073313	Silver flowering 2	2.453
	CRR073314	Silver flowering 3	2.013
	CRR073315	Gold flowering 1	4.475
	CRR073316	Gold flowering 2	8.679
	CRR073317	Gold flowering 3	4.172
	CRR073318	Tawny withering 1	11.226
	CRR073319	Tawny withering 2	10.529
	CRR073320	Tawny withering 3	11.806