Gene detail

Detail information of GWHGAAZE033799

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002266665.2	PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD50 [Vitis vinifera]
Swissprot	tr\|Q9SL02\|RAD50_ARATH	DNA repair protein RAD50
trEMBL	tr\|A0A0A0L416\|A0A0A0L416_CUCSA	Uncharacterized protein {ECO:0000313\|EMBL:KGN56710.1}
TAIR10	AT2G31970.1	DNA repair-recombination protein (RAD50)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000139	gene	80974	92629	+
GWHAAZE00000139	mRNA	80974	92629	+
GWHAAZE00000139	exon	80974	81139	+
GWHAAZE00000139	exon	83174	83288	+
GWHAAZE00000139	exon	83987	84116	+
GWHAAZE00000139	exon	84551	84760	+
GWHAAZE00000139	exon	85967	86175	+
GWHAAZE00000139	exon	86689	86890	+
GWHAAZE00000139	exon	87568	87736	+
GWHAAZE00000139	exon	88447	88757	+
GWHAAZE00000139	exon	89331	89456	+
GWHAAZE00000139	exon	89597	89649	+
GWHAAZE00000139	exon	90683	90833	+
GWHAAZE00000139	exon	90957	91019	+
GWHAAZE00000139	exon	92349	92467	+
GWHAAZE00000139	exon	92590	92629	+
GWHAAZE00000139	CDS	80974	81139	+
GWHAAZE00000139	CDS	83174	83288	+
GWHAAZE00000139	CDS	83987	84116	+
GWHAAZE00000139	CDS	84551	84760	+
GWHAAZE00000139	CDS	85967	86175	+
GWHAAZE00000139	CDS	86689	86890	+
GWHAAZE00000139	CDS	87568	87736	+
GWHAAZE00000139	CDS	88447	88757	+
GWHAAZE00000139	CDS	89331	89456	+
GWHAAZE00000139	CDS	89597	89649	+
GWHAAZE00000139	CDS	90683	90833	+
GWHAAZE00000139	CDS	90957	91019	+
GWHAAZE00000139	CDS	92349	92467	+
GWHAAZE00000139	CDS	92590	92629	+

Transcript Sequence
>GWHTAAZE033839 ATGATTATGCCTTTGTTAATGCACCGTTCCGTATGCAGAGCTCATACCATGGAGTATGATGACTTGTACTCAAAATCCCGAGAAGCCGAGAAGGAGGTGACTACATTGCAAACAAAAATAGACGGAGCTAACCGTTATCTTTCTCAACATCACAAGGATATGGAATCAAAAAGGAGATATATTGAGTCAAAACTACAGTCCTTGGATCGTGATGCTGTTACTATTGATGTTTATATGAGAGCTTTGGAACTGGCAAAAGAGAAAAGGGATGTCCACAAAAGCAAATATGACATTGCTGATGGTATGCGGCGAATGTTTGATCCTTTCGAGAGAGTTGCGCGGGCTCATCATACATGCCCTTGCTGTGAGCGCCCGTTCTCTGCTGAAGAGGAAGATGATTTTGTGAGAAAGCAAAGAGTGAAAGCTGTAAGTTCTGCAGAGCATATGAAAGTGTTGGCAGTGGAGTCCTCAAATGCTGATTCCTATTTCCAGCAGTTGGAAAAGCTCCGTATAGTATATGAAGAATATACCAAAATTGGCAAGGACATAATCCCAGTTGCCGAGAAGAATTTGAATGAGCTAAACATAGAATTGGAGGAAAAAACTCAAGCTCACGATGATGTGTTGGGTGTTTTGGCTCAAATTAAGGCTGATAAGGACGTGGTTGAGGCCTTGCTCCAACCTATAGAGAACGCTGACAGGCTCTTCCAAGAAATACAGACTCTGCAAAAGAAAGTGGATGATTTGGAGTATAAGCTTGATTCGCAAGGTCAAGGTGCAAAATCAATGGAGGAAATTCAGTTGGAGCTCAATACATTGCAAAGCAAAAAGGATAGTTTGCATAACGATATGGAGAAGTTAAGAGAGGAACAAAGGGACATGGAGAATGACGTGTCAAGTGTACAGTTAAAATGGCGTGCTGCAAGGGAAGAGAAGATTAAGGCATCGGTTGCTTTGCGTGATTTTGAAAAAGTAGAGGAGGAACTAGGTCGTCTTGCAGAGGAGAGAACTCAAGTTGAACTTGAAGAGAAGCATCTGACAGAGGCTCTTGGTCCTGCATTCAAAGAGAGAGAAAAATTGCTTCGTGACTACAATGATTTGAAAATCAAACTTGACTGTGAAGTTGAGAAACAGGCTCAACTGAAAGGAGAATACGAAATGGAAGTTGAGCAAATCCGGAGAAGAATTCTAAGATCCAAGAAAAGGAGAGATGTTAAAGGAACTAGAAGAAAAGAAAATTCTATCAGAATCGGAGCTTCAACGTCTTGCGAAAGTAGAAAACGGGAACTTTTAGCTGAGCTGGAAAAAAGTAAAGACTTGGTGCGAAGCCAGAGTGAACTAAAACGAAATATCGATGATAACTTAGATTACAGGAAGACAAAGGCTGAAGTCGATGAGCTTGCTCATGAGATCGAGTTGCTTGATGAGAGAGTATTGAAGCTTGGTGGAGTTTCCTCAGTTGAGTCCGAGCTTAAAAAGCTCGCAGACGAGAGAGAGAGACTTCTTTCAGAGATAAACAGATGCCGTGGTACCCTGTCTGTGTTTCAGAAAAATATTTCTAACTATAAAAGTGACCTTCGAAGAACAGAATACAAGGAAATTGACAGGCGGTACTTTGATCAGCTAATCCAGCTCAAGACAACGGAGATGGCTAACAAGGACCTGGACAGATATTACAATGCATTAGACAAAGCACTAATGCGCTTCCACTCAATGAAAATGGAGGAAATAAATAAGATAATAAGAGAATTGTGGCAGCAAACCTACAGGGGACAGGATATAGATTACATAAGCATTCATTCGGATTCTGAAGGTGCTGGTACTCGCTCATACAGCTACAGGGTTTTAATGCAAACTGGTGATGCTGAGCTAGAAATGCGAGGAAGGTGCAGTGCTGGTCAAAAGGACAGAAAAGGCCAGGAGAACTTCCAACTGATTGTTATCACACACGACGAGCGGTTTGCTCACCTTATTGGTCAACGTGAACATGCTGAAAGATATTATCGGGTCACAAAAGACGACCATCAACATAGTATAATTCAATCCCAGGAGATCTTTGATTGA

Network for GWHGAAZE033799

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04423.15	Rad50_zn_hook	112	147	9.00E-06

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10866	RAD50	Homologous recombination	map03440
		Non-homologous end-joining	map03450
		Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.517
	SRR3591706	second leaf	1.827
	SRR3591707	mature leaf	1.921
	SRR3591708	Shoot apex	7.288
	SRR3591709	Stem	6.882
	SRR3591710	White floral bud	4.902
	SRR3591711	White flower	6.755
	SRR3591712	Green floral bud	4.001
	SRR3591713	Yellow flower	5.295
SRP173429	SRR8316895	Juvenile bud stage	4.058
	SRR8316896	Juvenile bud stage	5.735
	SRR8316897	Juvenile bud stage	1.675
	SRR8316894	Third green stage	2.338
	SRR8316900	Third green stage	6.691
	SRR8316901	Third green stage	5.123
	SRR8316898	Complete white stage	1.551
	SRR8316899	Complete white stage	7.015
	SRR8316903	Complete white stage	4.889
	SRR8316902	Silver flowering stage	3.328
	SRR8316904	Silver flowering stage	5.313
	SRR8316905	Silver flowering stage	2.358
	SRR8316906	Gold flowering stage	6.920
	SRR8316907	Gold flowering stage	5.658
	SRR8316908	Gold flowering stage	6.066
SRP132670	SRR6706286	Control	2.944
	SRR6706287	Light intensity 50%	3.598
	SRR6706288	Light intensity 20%	3.586
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.526
	CNS0095593	Slightly white alabastrum(diploid) 2	3.850
	CNS0095594	Slightly white alabastrum(diploid) 3	2.909
	CNS0095595	Whole white alabastrum(diploid) 2	2.888
	CNS0095596	Whole white alabastrum(diploid) 3	2.702
	CNS0095597	Whole white alabastrum(diploid) 4	3.614
	CNS0095598	Silvery flower (diploied) 1	5.864
	CNS0095599	Silvery flower (diploied) 2	2.857
	CNS0095600	Silvery flower (diploied) 3	6.708
	CNS0095601	Golden flower (diploid) 1	3.594
	CNS0095602	Golden flower (diploid) 2	5.603
	CNS0095603	Golden flower (diploid) 3	5.063
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.954
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.977
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.105
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.682
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.797
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.956
	CNS0095610	Silvery flower (tetraploid) 1	10.529
	CNS0095611	Silvery flower (tetraploid) 2	7.768
	CNS0095612	Silvery flower (tetraploid) 3	10.019
	CNS0095613	Golden flower (tetraploid) 1	5.655
	CNS0095614	Golden flower (tetraploid) 2	8.336
	CNS0095615	Golden flower (tetraploid) 3	6.453
CRA001975	CRR073297	Stem 1	5.913
	CRR073298	Stem 2	7.701
	CRR073299	Stem 3	5.979
	CRR073300	Leaf 1	8.391
	CRR073301	Leaf 2	7.776
	CRR073302	Leaf 3	5.593
	CRR073303	Juvenile bud 1	5.625
	CRR073304	Juvenile bud 2	3.244
	CRR073305	Juvenile bud 3	6.696
	CRR073306	Third green 1	2.538
	CRR073307	Third green 2	1.728
	CRR073308	Third green 3	4.291
	CRR073309	Second white 1	2.626
	CRR073310	Second white 2	3.654
	CRR073311	Second white 3	5.384
	CRR073312	Silver flowering 1	1.909
	CRR073313	Silver flowering 2	1.970
	CRR073314	Silver flowering 3	2.102
	CRR073315	Gold flowering 1	2.022
	CRR073316	Gold flowering 2	2.897
	CRR073317	Gold flowering 3	0.959
	CRR073318	Tawny withering 1	6.379
	CRR073319	Tawny withering 2	6.745
	CRR073320	Tawny withering 3	6.005