Gene detail

Detail information of GWHGAAZE033798

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002266665.2	0	PREDICTED: LOW QUALITY PROTEIN: DNA repair protein RAD50 [Vitis vinifera]
Swissprot	tr\|Q9SL02\|RAD50_ARATH	0	DNA repair protein RAD50
trEMBL	tr\|A0A0A0L416\|A0A0A0L416_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN56710.1}
TAIR10	AT2G31970.1	2E-151	DNA repair-recombination protein (RAD50)

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000139	gene	64920	74269	+
GWHAAZE00000139	mRNA	64920	74269	+
GWHAAZE00000139	exon	64920	65065	+
GWHAAZE00000139	exon	66733	66847	+
GWHAAZE00000139	exon	69349	69577	+
GWHAAZE00000139	exon	70840	71018	+
GWHAAZE00000139	exon	71113	71283	+
GWHAAZE00000139	exon	72384	72488	+
GWHAAZE00000139	exon	72576	72683	+
GWHAAZE00000139	exon	72767	72993	+
GWHAAZE00000139	exon	73560	73652	+
GWHAAZE00000139	exon	74203	74269	+
GWHAAZE00000139	CDS	64920	65065	+
GWHAAZE00000139	CDS	66733	66847	+
GWHAAZE00000139	CDS	69349	69577	+
GWHAAZE00000139	CDS	70840	71018	+
GWHAAZE00000139	CDS	71113	71283	+
GWHAAZE00000139	CDS	72384	72488	+
GWHAAZE00000139	CDS	72576	72683	+
GWHAAZE00000139	CDS	72767	72993	+
GWHAAZE00000139	CDS	73560	73652	+
GWHAAZE00000139	CDS	74203	74269	+

Transcript Sequence
>GWHTAAZE033838 ATGGACCGTGAAATCCCTGCTCTTATGGGTGTCTCAAAGGCTGTTCTTGAAAATGTTATATTCGTACACCAAGATGAGGCGAATTGGCCATTGCAAGATCCTTCAACGTTGAAAAAGAAATTTGATGATATTTTCTCAGCCACTAGATACACAAAAGCCTTGGAGATTATTAAAAAGCTTCACAAGGATCAGGCTCAAGAGATAAAGACGTTTAAGTTGAAGCTGGAGAATCTTCAAATCCTGAAAGATGCTGCATACAAGCTTCGAGAAAACATTGCACAAGATGAAGAGAAAACAGAAGCAATAAAATGTCAAATGCAGGAGCTAGAATGTAGCATTCAAAACATTGCAACTAAGATCCATCATACAGAAGTTACACTAGAGGATCTACGGAAACTGAAGGAAGAGATATCTACGAAAACTGCTGTAAGAAGCACTTTGTTCAAGGAACAGCAGAAACAGTATAAAGATCTCAAGGAGGAGAATGAAGACACCGATGAAGAATTGAAGGAATGGAAAACCAAGTTTGAAGAAAGGATTGCAATGTTAGAATCCAAAATTAGTAAGCTGGCAAGGGAAGAGAATGACATAGATACAAAGAGTTCTATCCTTACCAGTAATATTAAGGAATATCTTCAGCAAATAAGCAAGCGGCAAGCTGAGGCTGAGGCTCATATGTCCTTGAAGAAGGAAAGAGATTCGAAAATCAAAGAGCTTTTCCAAAAGCGCAATTTAGGGTCCCTCCCTGATATGCCCTTTAGCAATGAAGTTGCCTTGAACCTAGCAAACCGCATAGAGTCAAGGTTGATGGATCTTAACAAGGACTTGCGAGATAAAAAGAAATCAACCCAGGCTGAACTTTCAGGGGCATGGGATCGCTACATGATTGCGAATGAGCGGTGGACTGGCATTGAGGCTCAAAAAAAGGCAAAAGCTGAAAATCAGGCTCGAATCTTGACAGGCATAGAAGAGAAGACAATTGAGCGCGATTCGTCTGAACTCAAAGTTGCAGGCTTTAATTTGGTTCAAATTGACGAGAGAGAAAAGAATTCGTGTAGTGAACTTGAGAGAAAGAGTAAACAGCTTGTTGAAAGGAACTTTGAGCAAAGTATACGGCAAAAGCAGACTGAGATATTTACCACAAATCAAGAAATTAAAGTCCTTAACCGGGAAAAAGACATCATGGCTGCTGATTATGAGGACAGAATCGACTTGTCTCGAAAGAAGGCCGAGTTGGAAGACCTCAAGAAGAAACACAAGAAGATGCAAGTCAAGCCTTCATTGGATGAACACAAGGATAAAATTAGAGGGGTGCTAAAAGGAAGGCGCCCTCCGGACAGGGATTTGAAGAAAGAAGTTAGTCAAGCCATAAGTGGTAAATGGTCAAAAGTGGTTACTTTTGACCTAGCCAAAGCAGCCATTCTTGACGTAGACAATTAA

Network for GWHGAAZE033798

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10866	RAD50	Homologous recombination	map03440
		Non-homologous end-joining	map03450
		Cellular senescence	map04218

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	6.449
	SRR3591706	second leaf	1.582
	SRR3591707	mature leaf	2.510
	SRR3591708	Shoot apex	4.505
	SRR3591709	Stem	3.897
	SRR3591710	White floral bud	3.116
	SRR3591711	White flower	4.232
	SRR3591712	Green floral bud	2.464
	SRR3591713	Yellow flower	2.760
SRP173429	SRR8316895	Juvenile bud stage	2.213
	SRR8316896	Juvenile bud stage	3.986
	SRR8316897	Juvenile bud stage	0.788
	SRR8316894	Third green stage	1.621
	SRR8316900	Third green stage	5.656
	SRR8316901	Third green stage	2.564
	SRR8316898	Complete white stage	0.866
	SRR8316899	Complete white stage	3.568
	SRR8316903	Complete white stage	5.403
	SRR8316902	Silver flowering stage	2.757
	SRR8316904	Silver flowering stage	4.318
	SRR8316905	Silver flowering stage	2.261
	SRR8316906	Gold flowering stage	5.066
	SRR8316907	Gold flowering stage	4.497
	SRR8316908	Gold flowering stage	4.957
SRP132670	SRR6706286	Control	2.603
	SRR6706287	Light intensity 50%	3.122
	SRR6706288	Light intensity 20%	3.194
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.499
	CNS0095593	Slightly white alabastrum(diploid) 2	0.466
	CNS0095594	Slightly white alabastrum(diploid) 3	1.269
	CNS0095595	Whole white alabastrum(diploid) 2	0.941
	CNS0095596	Whole white alabastrum(diploid) 3	1.031
	CNS0095597	Whole white alabastrum(diploid) 4	2.199
	CNS0095598	Silvery flower (diploied) 1	1.598
	CNS0095599	Silvery flower (diploied) 2	1.575
	CNS0095600	Silvery flower (diploied) 3	4.468
	CNS0095601	Golden flower (diploid) 1	1.088
	CNS0095602	Golden flower (diploid) 2	3.692
	CNS0095603	Golden flower (diploid) 3	4.236
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.618
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.219
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.822
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.865
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.039
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.744
	CNS0095610	Silvery flower (tetraploid) 1	8.211
	CNS0095611	Silvery flower (tetraploid) 2	8.512
	CNS0095612	Silvery flower (tetraploid) 3	8.143
	CNS0095613	Golden flower (tetraploid) 1	2.298
	CNS0095614	Golden flower (tetraploid) 2	4.435
	CNS0095615	Golden flower (tetraploid) 3	5.489
CRA001975	CRR073297	Stem 1	4.501
	CRR073298	Stem 2	4.088
	CRR073299	Stem 3	3.163
	CRR073300	Leaf 1	4.854
	CRR073301	Leaf 2	3.473
	CRR073302	Leaf 3	3.600
	CRR073303	Juvenile bud 1	3.347
	CRR073304	Juvenile bud 2	1.763
	CRR073305	Juvenile bud 3	3.916
	CRR073306	Third green 1	1.642
	CRR073307	Third green 2	1.102
	CRR073308	Third green 3	1.571
	CRR073309	Second white 1	0.377
	CRR073310	Second white 2	1.988
	CRR073311	Second white 3	2.400
	CRR073312	Silver flowering 1	0.841
	CRR073313	Silver flowering 2	1.142
	CRR073314	Silver flowering 3	1.344
	CRR073315	Gold flowering 1	0.582
	CRR073316	Gold flowering 2	1.659
	CRR073317	Gold flowering 3	0.576
	CRR073318	Tawny withering 1	1.702
	CRR073319	Tawny withering 2	1.316
	CRR073320	Tawny withering 3	2.226