Gene detail

Detail information of GWHGAAZE033775

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007014229.1	4.40212E-63	Kinase, putative [Theobroma cacao]
Swissprot	tr\|Q9XID3\|Y1343_ARATH	8E-22	G-type lectin S-receptor-like serine/threonine-protein kinase At1g34300 (Precursor)
trEMBL	tr\|A0A061GR16\|A0A061GR16_THECC	2E-63	Kinase, putative {ECO:0000313\|EMBL:EOY31848.1}
TAIR10	AT1G34300.1	7E-20	lectin protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000135	gene	70373	70888	+
GWHAAZE00000135	mRNA	70373	70888	+
GWHAAZE00000135	exon	70373	70888	+
GWHAAZE00000135	CDS	70373	70888	+

Transcript Sequence
>GWHTAAZE033815 ATGACACTGACTGGAAATCGAGGGACCCCTGGATATGCTGCACCGGAAATGTGGATGCCATATCCGGTGACCCAAAAATGCGATGTTTACAGTTTTGGGATGCTTTTGTTTGAGATTTTGGGGAGGCGAAGAAACTTTGACTTGAATTTACCGGAAAGTCAAGAGTGGTTTCCCAAATGGGTTTGGAAGAAATTTGACAAAGGAAAGTTGTCGGAGGTGATGGATGTTTGCGCTATTGAAGAGATGGACAGAGGGAAAGCAGGAAGAATGGCTGTAATTGCTTTATGTTGTGTGCAGTATAATTCGGAGAGTAGGCCGTTAATGAGTGAGGTGGTGAAGATGTTGGAAGGTGGGGTTGATATTCCGATTCCGAAAAACCCATTTCCATGTTTTTTTGAAGTAACGGATAGAGCTTGCGGTTTAGTCCCGGGATCCCCTCGAGTATCAACTGAAACTGATTATTCTTCTGTGTCCCCTGTTGTAAGTAACAATGAGATTGAAATAGTTACGACCTGA

Network for GWHGAAZE033775

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	11	115	5.40E-07

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-Os

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.969
	SRR3591706	second leaf	0.574
	SRR3591707	mature leaf	0.490
	SRR3591708	Shoot apex	0.659
	SRR3591709	Stem	1.602
	SRR3591710	White floral bud	0.469
	SRR3591711	White flower	0.813
	SRR3591712	Green floral bud	0.730
	SRR3591713	Yellow flower	0.539
SRP173429	SRR8316895	Juvenile bud stage	1.090
	SRR8316896	Juvenile bud stage	1.957
	SRR8316897	Juvenile bud stage	0.092
	SRR8316894	Third green stage	0.758
	SRR8316900	Third green stage	1.172
	SRR8316901	Third green stage	2.033
	SRR8316898	Complete white stage	0.282
	SRR8316899	Complete white stage	0.897
	SRR8316903	Complete white stage	0.475
	SRR8316902	Silver flowering stage	0.046
	SRR8316904	Silver flowering stage	0.454
	SRR8316905	Silver flowering stage	0.240
	SRR8316906	Gold flowering stage	0.127
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.089
SRP132670	SRR6706286	Control	0.309
	SRR6706287	Light intensity 50%	0.547
	SRR6706288	Light intensity 20%	0.259
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.399
	CNS0095593	Slightly white alabastrum(diploid) 2	3.089
	CNS0095594	Slightly white alabastrum(diploid) 3	2.358
	CNS0095595	Whole white alabastrum(diploid) 2	1.200
	CNS0095596	Whole white alabastrum(diploid) 3	2.517
	CNS0095597	Whole white alabastrum(diploid) 4	0.966
	CNS0095598	Silvery flower (diploied) 1	1.007
	CNS0095599	Silvery flower (diploied) 2	1.409
	CNS0095600	Silvery flower (diploied) 3	0.282
	CNS0095601	Golden flower (diploid) 1	1.150
	CNS0095602	Golden flower (diploid) 2	0.387
	CNS0095603	Golden flower (diploid) 3	0.427
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.212
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.869
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.456
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.399
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.298
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.152
	CNS0095610	Silvery flower (tetraploid) 1	0.187
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.118
	CNS0095614	Golden flower (tetraploid) 2	0.282
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	2.056
	CRR073298	Stem 2	1.167
	CRR073299	Stem 3	0.111
	CRR073300	Leaf 1	1.540
	CRR073301	Leaf 2	1.882
	CRR073302	Leaf 3	0.204
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.073
	CRR073305	Juvenile bud 3	0.110
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.329
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.291
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	1.541
	CRR073319	Tawny withering 2	1.217
	CRR073320	Tawny withering 3	0.058