Gene detail

Detail information of GWHGAAZE033773

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008371998.1	9.43537E-12	PREDICTED: protein CUP-SHAPED COTYLEDON 2-like [Malus domestica]
Swissprot	tr\|Q9FWX2\|NAC7_ARATH	0.000009	NAC domain-containing protein 7
trEMBL	tr\|M1C571\|M1C571_SOLTU	0.0000002	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400060089}
TAIR10	AT4G36160.1	0.000001	NAC domain containing protein 76

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000134	gene	1378951	1380405	-
GWHAAZE00000134	mRNA	1378951	1380405	-
GWHAAZE00000134	exon	1380178	1380405	-
GWHAAZE00000134	exon	1379637	1379861	-
GWHAAZE00000134	exon	1379302	1379364	-
GWHAAZE00000134	exon	1378951	1379124	-
GWHAAZE00000134	CDS	1380178	1380405	-
GWHAAZE00000134	CDS	1379637	1379861	-
GWHAAZE00000134	CDS	1379302	1379364	-
GWHAAZE00000134	CDS	1379044	1379124	-
GWHAAZE00000134	three_prime_UTR	1378951	1379043	-

Transcript Sequence
>GWHTAAZE033813 ACGGAGCTGAAGAGTTTGCAGATAGAACTGAAGAAATGGAAAGAGCGGGAAGAAGGATACCAGTCGCTTGGTTTTATTTTCAGGCCAACCGAGGGATTCTTAGTTGATCACTACTTGAGGAAAGCAATCTTGGATGAATTAATGGAAGGATCATGCCCCATTAGTGATATTGGATTTTACCGTTACCATCCTCGTGACCTCACTGGTAGTGGTTTTTTTTATAGTAATAGATCTGCCCACATTCCGGAAAAATGTTTGGTACTTCTTCAGTCCCTGCCTTCCAGAAAAGTTTATCAAGGTGCAAATGATCAGGGCCAGTGGAGAATTAATGGCCGAAAGAGTGCTGTGTATCATGAGGGCAAGAAAGTGGGTAACATGCTACTATTGGAGCATTTTGAAGGCAATCAGAAGACCAATTATAAAATCATCCAGTACAAGCTTAAGCACGTTGAGGAAGAATTTTATGTTTATAAGATGTACGAGGACGAGACGACGTGTAGCTGTGAGAAATACCCGGCATGTTCACTTAGGCGAAGGCCAAGGAAGGAGTCTCTTGGACATATTTTGTATCATGGGATACGTGAGTATTATCAATAAGGCTATGTTTGCATGCGGATTAGGAGGCTATGTTTGTTGCAAATCGATAGAATAAAGCACTGGATAAATTATCTTGACTTAGTTTATCCCATG

Network for GWHGAAZE033773

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	24	146	1.40E-08

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.241
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.973
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.421
	SRR8316896	Juvenile bud stage	0.615
	SRR8316897	Juvenile bud stage	0.179
	SRR8316894	Third green stage	0.105
	SRR8316900	Third green stage	0.437
	SRR8316901	Third green stage	0.329
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.000
	SRR8316905	Silver flowering stage	0.050
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.111
	SRR6706288	Light intensity 20%	0.096
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.845
	CNS0095593	Slightly white alabastrum(diploid) 2	1.657
	CNS0095594	Slightly white alabastrum(diploid) 3	2.408
	CNS0095595	Whole white alabastrum(diploid) 2	0.418
	CNS0095596	Whole white alabastrum(diploid) 3	0.875
	CNS0095597	Whole white alabastrum(diploid) 4	0.713
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.000
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.766
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.282
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.215
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.438
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.437
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.067
	CRR073298	Stem 2	0.193
	CRR073299	Stem 3	0.400
	CRR073300	Leaf 1	0.271
	CRR073301	Leaf 2	0.107
	CRR073302	Leaf 3	0.059
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.054
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.031
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.076
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.128
	CRR073320	Tawny withering 3	0.000