Gene detail

Detail information of GWHGAAZE033740

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP05771.1	6.27575E-20	unnamed protein product [Coffea canephora]
Swissprot	tr\|F4I6M1\|POLIA_ARATH	3E-18	DNA polymerase I A, chloroplastic/mitochondrial (Precursor)
trEMBL	tr\|A0A068UBD4\|A0A068UBD4_COFCA	2E-20	Coffea canephora DH200=94 genomic scaffold, scaffold_19 {ECO:0000313\|EMBL:CDP05771.1}
TAIR10	AT1G50840.1	1E-16	polymerase gamma 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000130	gene	738444	742745	+
GWHAAZE00000130	mRNA	738444	742745	+
GWHAAZE00000130	exon	738444	738822	+
GWHAAZE00000130	exon	740695	740872	+
GWHAAZE00000130	exon	742493	742745	+
GWHAAZE00000130	five_prime_UTR	738444	738822	+
GWHAAZE00000130	five_prime_UTR	740695	740723	+
GWHAAZE00000130	CDS	740724	740872	+
GWHAAZE00000130	CDS	742493	742745	+

Transcript Sequence
>GWHTAAZE033780 ATGACACTTGATGGAAGCAACAAATGCGATACTGCAGAATGTGAGCATCCATCTCCTCATCACTCAAATCAGACTAATTACTTGCAAAGGAATGTGAACTCCAATGGTTTAAATGCTGCTCTGCCAAAGAGCAATAGGTGTAAGAAGGGTGATATATGGCTTAAGAAGATCGGAATATCGAGCAAAGTGAAGGCAAATCTTCTTATATTCTCTAGAAAATCTAAGGATGCTAAAGATGAGAAGCTTCCGATTCATGAGAGGCTTAATCAAATTTATGAGAAGGTTCTTGTAGTCGATAATAAATGTGTAGCCGAGGAGGTTGTTGCGAAGCTTACAAACCAGTATAGGCATCTTATCCATGCATGCAATACAGAGGCATAATACAATGAGGTTCATGTGGATGAGGAAATGGACAAGATTTGGAGGCTTCAAAATGGATCAGATATCAGTGGAGTGGCGGTGGAGGGGGATGAGGGGCAGTCGGTGGACCTGGAGCTGCTGGCTGCAGGAGGCTATTGCACAGTGCTTTGGGGAGTGGGTGATAAAGGGATTGAAAGGTTGTATGCTGACGAGAAACCGATTGGTGAAGTATCACTGGAAGCCGTCTTTGGGAGGAGAACGGTGAAGAAAGATGGATTTCCAGGAAAAAATATCACCGTTCCTCCGGTTGAAGATCTTGAAAGAGTAGAGCTGAATCTTTGGGTTTCTTTTTCTTCCTTAGGTTCAATAAACATGCTAAAGCTCTACGAGAGCTTAAAAACTAATTTATCTTGCATGGAATGGAATCTCAATGGAGTTAAACATGTTTGA

Network for GWHGAAZE033740

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02335	polA	DNA replication	map03030
		Base excision repair	map03410
		Nucleotide excision repair	map03420
		Homologous recombination	map03440

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.439
	SRR3591706	second leaf	0.083
	SRR3591707	mature leaf	0.327
	SRR3591708	Shoot apex	0.683
	SRR3591709	Stem	0.428
	SRR3591710	White floral bud	0.374
	SRR3591711	White flower	0.475
	SRR3591712	Green floral bud	0.159
	SRR3591713	Yellow flower	0.372
SRP173429	SRR8316895	Juvenile bud stage	0.662
	SRR8316896	Juvenile bud stage	0.799
	SRR8316897	Juvenile bud stage	0.265
	SRR8316894	Third green stage	0.434
	SRR8316900	Third green stage	0.661
	SRR8316901	Third green stage	0.624
	SRR8316898	Complete white stage	0.012
	SRR8316899	Complete white stage	0.654
	SRR8316903	Complete white stage	0.653
	SRR8316902	Silver flowering stage	0.252
	SRR8316904	Silver flowering stage	0.346
	SRR8316905	Silver flowering stage	0.063
	SRR8316906	Gold flowering stage	0.548
	SRR8316907	Gold flowering stage	0.530
	SRR8316908	Gold flowering stage	0.032
SRP132670	SRR6706286	Control	0.160
	SRR6706287	Light intensity 50%	0.139
	SRR6706288	Light intensity 20%	0.108
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.166
	CNS0095593	Slightly white alabastrum(diploid) 2	0.493
	CNS0095594	Slightly white alabastrum(diploid) 3	0.260
	CNS0095595	Whole white alabastrum(diploid) 2	0.120
	CNS0095596	Whole white alabastrum(diploid) 3	0.334
	CNS0095597	Whole white alabastrum(diploid) 4	0.637
	CNS0095598	Silvery flower (diploied) 1	0.685
	CNS0095599	Silvery flower (diploied) 2	0.053
	CNS0095600	Silvery flower (diploied) 3	0.325
	CNS0095601	Golden flower (diploid) 1	0.317
	CNS0095602	Golden flower (diploid) 2	0.548
	CNS0095603	Golden flower (diploid) 3	0.605
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.045
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.162
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.195
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.285
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.202
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.263
	CNS0095610	Silvery flower (tetraploid) 1	0.377
	CNS0095611	Silvery flower (tetraploid) 2	0.061
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.153
	CNS0095614	Golden flower (tetraploid) 2	0.067
	CNS0095615	Golden flower (tetraploid) 3	0.124
CRA001975	CRR073297	Stem 1	0.054
	CRR073298	Stem 2	0.594
	CRR073299	Stem 3	0.213
	CRR073300	Leaf 1	0.074
	CRR073301	Leaf 2	0.104
	CRR073302	Leaf 3	0.023
	CRR073303	Juvenile bud 1	0.025
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.029
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.026
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.040
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000