Gene detail

Detail information of GWHGAAZE033700

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDO97677.1	3.2594E-170	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9ZVH0\|FEZ_ARATH	6E-61	Protein FEZ
trEMBL	tr\|A0A068TNX5\|A0A068TNX5_COFCA	1E-170	Coffea canephora DH200=94 genomic scaffold, scaffold_1 {ECO:0000313\|EMBL:CDO97677.1}
TAIR10	AT2G02450.2	5E-92	NAC domain containing protein 35

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000118	gene	6658	9723	+
GWHAAZE00000118	mRNA	6658	9723	+
GWHAAZE00000118	exon	6658	6904	+
GWHAAZE00000118	exon	7494	7762	+
GWHAAZE00000118	exon	9145	9723	+
GWHAAZE00000118	CDS	6658	6904	+
GWHAAZE00000118	CDS	7494	7762	+
GWHAAZE00000118	CDS	9145	9723	+

Transcript Sequence
>GWHTAAZE033740 TTTATGGCAATTGCAGTATTGACCATGAACCAAGAAGCTCAAGACCATGAAAGCAACAACAACAACAACGACAACAACAACAAAGACGAGCACGAACATGATTTGGTCATGCCCGGTTTTCGCTTCCACCCCACCGAAGAAGAACTTGTTGAGTTTTACCTTCGTCGTAAGGTTGAAGGCAAGAGATTCAATGTCGAGCTCATCACTTTTCTTGATCTTTATCGCTACGATCCTTGGGAACTTCCCGCTTTGGCAGCAATTGGGGAGAAAGAATGGTTCTTTTATGTCCCCAGAGATCGAAAATATCGAAACGGGGATAGGCCTAATCGCGTGACGACATCTGGTTATTGGAAGGCAACGGGAGCTGATAGAATGATAAGAAGTGAAAATTGTCGATCGATTGGGCTGAAGAAGACCCTTGTTTTCTACTCCGGTAAAGCTCCCAAAGGGATCCGAACTAGCTGGATTATGAACGAATATCGCCTTCCCCACCACGAAACCGAACGATTGCAAAAGGCAGAAATTTCACTTTGTCGCGTCTACAAGAGAGCCGGAGTAGAGGATCACCCATGTATCCCTCGGTCTATTCCCACGCGGGCTTCTGCATCAACACAATCCAGCAAAAAACAACACGAAATCTTGTACCAATCAATGGATAGATTCCAATCTTTTGGAACCAATAATTCAAATCAAATCGAGGAGAAAATGGGCGAAACGAGTGGGAGTAGCGTTACGAACGCGGGGACAGATCTCGGGCTTTCCAGCCACAACTCTTACGTTCCATTAATACCCGTAACAGCAACGGCGACTACACTTGTACCACATGCCTCTTCGCTTGTACCTAACTGCACTACTATCTTCAATGACTCAACAAGTACTAGTATGGTGCCACCAAATGGAGTTGATGATTTCCATAGACTAATTAACTACCATCAACAAGTTTCTATGATTCATCAGCAGCAGCAAATATTTTCTACTAATTTGCAGCCTCAAATACTACTAAATGGATCAGTTCACGGCCCGTTTTCGGATAGACTATGGGAATGGAACTCAATGACAGAGGCAAGCAAAGATTACACTGGCCCTTTTAAGTAA

Network for GWHGAAZE033700

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02365.16	NAM	38	162	3.80E-34

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	NAC

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.242
	SRR3591706	second leaf	7.019
	SRR3591707	mature leaf	13.362
	SRR3591708	Shoot apex	3.978
	SRR3591709	Stem	0.635
	SRR3591710	White floral bud	1.337
	SRR3591711	White flower	1.369
	SRR3591712	Green floral bud	3.310
	SRR3591713	Yellow flower	0.381
SRP173429	SRR8316895	Juvenile bud stage	2.679
	SRR8316896	Juvenile bud stage	1.926
	SRR8316897	Juvenile bud stage	1.256
	SRR8316894	Third green stage	0.600
	SRR8316900	Third green stage	2.922
	SRR8316901	Third green stage	2.420
	SRR8316898	Complete white stage	0.657
	SRR8316899	Complete white stage	1.509
	SRR8316903	Complete white stage	0.460
	SRR8316902	Silver flowering stage	0.653
	SRR8316904	Silver flowering stage	0.427
	SRR8316905	Silver flowering stage	0.295
	SRR8316906	Gold flowering stage	0.561
	SRR8316907	Gold flowering stage	1.039
	SRR8316908	Gold flowering stage	0.480
SRP132670	SRR6706286	Control	2.866
	SRR6706287	Light intensity 50%	2.846
	SRR6706288	Light intensity 20%	3.900
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.348
	CNS0095593	Slightly white alabastrum(diploid) 2	3.849
	CNS0095594	Slightly white alabastrum(diploid) 3	3.354
	CNS0095595	Whole white alabastrum(diploid) 2	4.051
	CNS0095596	Whole white alabastrum(diploid) 3	4.199
	CNS0095597	Whole white alabastrum(diploid) 4	3.268
	CNS0095598	Silvery flower (diploied) 1	3.066
	CNS0095599	Silvery flower (diploied) 2	4.564
	CNS0095600	Silvery flower (diploied) 3	1.576
	CNS0095601	Golden flower (diploid) 1	2.231
	CNS0095602	Golden flower (diploid) 2	0.936
	CNS0095603	Golden flower (diploid) 3	1.110
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.300
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.513
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.199
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.986
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.891
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.277
	CNS0095610	Silvery flower (tetraploid) 1	0.193
	CNS0095611	Silvery flower (tetraploid) 2	0.350
	CNS0095612	Silvery flower (tetraploid) 3	0.664
	CNS0095613	Golden flower (tetraploid) 1	0.459
	CNS0095614	Golden flower (tetraploid) 2	0.114
	CNS0095615	Golden flower (tetraploid) 3	0.146
CRA001975	CRR073297	Stem 1	5.366
	CRR073298	Stem 2	4.149
	CRR073299	Stem 3	2.392
	CRR073300	Leaf 1	4.795
	CRR073301	Leaf 2	7.083
	CRR073302	Leaf 3	3.488
	CRR073303	Juvenile bud 1	3.259
	CRR073304	Juvenile bud 2	4.027
	CRR073305	Juvenile bud 3	2.648
	CRR073306	Third green 1	3.429
	CRR073307	Third green 2	1.406
	CRR073308	Third green 3	2.545
	CRR073309	Second white 1	1.254
	CRR073310	Second white 2	0.061
	CRR073311	Second white 3	0.421
	CRR073312	Silver flowering 1	0.129
	CRR073313	Silver flowering 2	0.097
	CRR073314	Silver flowering 3	0.038
	CRR073315	Gold flowering 1	9.704
	CRR073316	Gold flowering 2	11.063
	CRR073317	Gold flowering 3	5.029
	CRR073318	Tawny withering 1	4.276
	CRR073319	Tawny withering 2	4.310
	CRR073320	Tawny withering 3	3.064