Gene detail

Detail information of GWHGAAZE033692

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006453346.1	0	hypothetical protein CICLE_v10008604mg [Citrus clementina]
COG	YP_004861889.1	9E-22	serine/threonine protein kinase
Swissprot	tr\|Q5XF57\|Y5576_ARATH	1E-121	Probable receptor-like serine/threonine-protein kinase At5g57670
trEMBL	tr\|V4UV95\|V4UV95_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR66586.1}
TAIR10	AT2G18890.1	2E-133	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000115	gene	481256	483826	+
GWHAAZE00000115	mRNA	481256	483826	+
GWHAAZE00000115	exon	481256	481454	+
GWHAAZE00000115	exon	481962	482216	+
GWHAAZE00000115	exon	482765	482922	+
GWHAAZE00000115	exon	483058	483137	+
GWHAAZE00000115	exon	483386	483521	+
GWHAAZE00000115	exon	483605	483826	+
GWHAAZE00000115	CDS	481256	481454	+
GWHAAZE00000115	CDS	481962	482216	+
GWHAAZE00000115	CDS	482765	482922	+
GWHAAZE00000115	CDS	483058	483137	+
GWHAAZE00000115	CDS	483386	483521	+
GWHAAZE00000115	CDS	483605	483826	+

Transcript Sequence
>GWHTAAZE033732 ATGAAATATATCCGCAGTGGCAGCTTCAAGAGGCTCTTCTCGCTCAAGCGCCGAAGCTTCGACGGAAAAGAACTCCATTCAGACCAACAAGACCTCACATTGATTTCTCCGCAAAACACTCACCCTTCTCATACGAAACCCACTTGGAGAAGCTTCTCCTTTGATGAAATCTTCATTGCCACTAATGGTTTTAGCTCAGATAAATTGGTGGGGAAAGGAGGGTATGCAGAGGTATACAGAGGGGTATTGGAAAATGGAGAAGCAATTGCAGTAAAAAGGCTAACAAAAGAATCCAGTGATGAGAGGAAAGAAAAGGAATTCTTAACAGAAATCGGTACACTTGGACATGTTACCCATCCAAATGTAGCTTCCCTATTGGGTTGTTGCATTGACAATGGCCTTTATCTTATTTTCCAGTTCTCTGCTAAAGGCTCTGTTGCTTCTCTTCTTCATGATGAAAATTTACCAGCAATGGACTGGAAAACGCGGTATAAAATTGCGGTTGGAACTGCTCGAGGACTTCATTACTTGCACAAAGTATGCCCAAGAAGAATAATTCATCGCGACATTAAGGCTTCTAACGTTTTGGTTACTTCCGATTTTGAACCACAGATATCTGATTTTGGATTAGCAAAATGGCTTCCTTCACAATGGACTCATCATTCAATAGTTCCTATTGAAGGGACATTTGGGCACTTAGCCCCAGAGTATTTCATGCATGGAGTTGTGGATGAGAAGACAGATGTGTTTGCTTTCGGAGTATTTTTACTAGAAATTATCTCTGGAAGAAAACCGGTGGATGGATCTCATCAGAGCTTACACAGCTGGGCTAAACCTATATTAAACCAAGGGAATTATGAGAAACTTGTTGACTCAAGGCTTGAAGGGTTATATGATATTACTCAGCTGAATAGATTGGCTTTTGCAGCCTCTCTTTGCATCAGAGCTTCTTCCACTTGGCGACCAACCATGAGTGAGGTAGCTATTGTTGTTCAACCTCAATTTCTTGCTAAAATACTAAATAAATTAATTAATAAAAAGATATTATGA

Network for GWHGAAZE033692

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	67	272	1.90E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VI

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.874
	SRR3591706	second leaf	16.737
	SRR3591707	mature leaf	5.992
	SRR3591708	Shoot apex	8.944
	SRR3591709	Stem	7.596
	SRR3591710	White floral bud	7.007
	SRR3591711	White flower	3.035
	SRR3591712	Green floral bud	4.441
	SRR3591713	Yellow flower	0.514
SRP173429	SRR8316895	Juvenile bud stage	1.839
	SRR8316896	Juvenile bud stage	3.349
	SRR8316897	Juvenile bud stage	1.224
	SRR8316894	Third green stage	1.215
	SRR8316900	Third green stage	2.828
	SRR8316901	Third green stage	3.704
	SRR8316898	Complete white stage	2.344
	SRR8316899	Complete white stage	7.985
	SRR8316903	Complete white stage	5.746
	SRR8316902	Silver flowering stage	0.397
	SRR8316904	Silver flowering stage	1.320
	SRR8316905	Silver flowering stage	0.342
	SRR8316906	Gold flowering stage	1.075
	SRR8316907	Gold flowering stage	0.712
	SRR8316908	Gold flowering stage	0.693
SRP132670	SRR6706286	Control	3.490
	SRR6706287	Light intensity 50%	2.746
	SRR6706288	Light intensity 20%	3.974
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.341
	CNS0095593	Slightly white alabastrum(diploid) 2	2.018
	CNS0095594	Slightly white alabastrum(diploid) 3	2.718
	CNS0095595	Whole white alabastrum(diploid) 2	3.075
	CNS0095596	Whole white alabastrum(diploid) 3	1.568
	CNS0095597	Whole white alabastrum(diploid) 4	4.404
	CNS0095598	Silvery flower (diploied) 1	7.270
	CNS0095599	Silvery flower (diploied) 2	7.836
	CNS0095600	Silvery flower (diploied) 3	4.088
	CNS0095601	Golden flower (diploid) 1	9.120
	CNS0095602	Golden flower (diploid) 2	6.608
	CNS0095603	Golden flower (diploid) 3	6.941
	CNS0095604	Slightly white alabastrum(tetraploid) 1	2.619
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.413
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.423
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.399
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.583
	CNS0095609	Whole white alabastrum(tetraploid) 3	4.911
	CNS0095610	Silvery flower (tetraploid) 1	3.154
	CNS0095611	Silvery flower (tetraploid) 2	7.815
	CNS0095612	Silvery flower (tetraploid) 3	0.895
	CNS0095613	Golden flower (tetraploid) 1	0.615
	CNS0095614	Golden flower (tetraploid) 2	1.280
	CNS0095615	Golden flower (tetraploid) 3	3.092
CRA001975	CRR073297	Stem 1	5.621
	CRR073298	Stem 2	5.110
	CRR073299	Stem 3	2.571
	CRR073300	Leaf 1	4.784
	CRR073301	Leaf 2	3.405
	CRR073302	Leaf 3	1.979
	CRR073303	Juvenile bud 1	3.770
	CRR073304	Juvenile bud 2	2.643
	CRR073305	Juvenile bud 3	4.792
	CRR073306	Third green 1	0.085
	CRR073307	Third green 2	0.247
	CRR073308	Third green 3	0.557
	CRR073309	Second white 1	0.027
	CRR073310	Second white 2	0.035
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.960
	CRR073316	Gold flowering 2	2.903
	CRR073317	Gold flowering 3	1.990
	CRR073318	Tawny withering 1	8.979
	CRR073319	Tawny withering 2	5.596
	CRR073320	Tawny withering 3	4.431