Gene detail

Detail information of GWHGAAZE033659

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009136187.1	5.6569E-118	PREDICTED: vacuolar protein sorting-associated protein 2 homolog 1 [Brassica rapa]
Swissprot	tr\|Q701F9\|VPS2A_ARATH	2E-117	Vacuolar protein sorting-associated protein 2 homolog 1
trEMBL	tr\|A0A078DW24\|A0A078DW24_BRANA	2E-118	BnaA03g38190D protein {ECO:0000313\|EMBL:CDX93097.1}
TAIR10	AT2G06530.1	5E-81	SNF7 family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000107	gene	156061	158685	+
GWHAAZE00000107	mRNA	156061	158685	+
GWHAAZE00000107	exon	156061	156168	+
GWHAAZE00000107	exon	157029	157133	+
GWHAAZE00000107	exon	157487	157747	+
GWHAAZE00000107	exon	158545	158685	+
GWHAAZE00000107	CDS	156061	156168	+
GWHAAZE00000107	CDS	157029	157133	+
GWHAAZE00000107	CDS	157487	157747	+
GWHAAZE00000107	CDS	158545	158685	+

Transcript Sequence
>GWHTAAZE033698 ATGATTGATAAATCTATCAGAGATATAGAAAGAGAGAGACAAGGCCTACAAACGCAAGAGAAGAAACTTATTGTTGAGATAAAGAAAAGTGCAAAGCAAGGACAGATGGGAGCTGTAAAGGTTATGGCGAAAGACCTTATCAGAACAAGGCATCAGATTGAAAAATTTTATAAGCTTAAATCCCAACTCCAGGGTGTATCTCTAAGAATTCAGACTTTAAAGTCGACACAAGCAATGGGAGAGGCAATGAAGGGTGTCACAAAGGCTATGGGACAAATGAATAGACAGATGAACTTACCATCTTTGCAAAGGATAATGCAAGAATTTGAGATGCAGAATGAGAAAATGGAAATGGTTTCCGAGGTTATGGGAGATGCCATCGATGATGCTTTGGAAGGGGATGAGGAAGAGGAAGAAACCGAAGAGCTAGTGAGCCAGGTTCTTGATGAGATTGGAATCGATATGAACAATGAGTTGATGAATGCGCCCTCTGCGGCTGTAGCTGCACCGGCGGCAAAGAACAAGGTACCGCAAGCCGAAGTGCCAGCGACTGAAGATGGTGGTGGAATAGACAGTGACCTACAAGCCAGGTTAGACAACCTCCGAAAAATGTAA

Network for GWHGAAZE033659

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF03357.22	Snf7	2	166	1.60E-43

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12191	CHMP2A	Endocytosis	map04144
K12191	CHMP2A	Necroptosis	map04217

Gene Ontology

GO term	Ontology	Name
GO:0007034	biological_process	vacuolar transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.559
	SRR3591706	second leaf	2.054
	SRR3591707	mature leaf	1.732
	SRR3591708	Shoot apex	0.371
	SRR3591709	Stem	4.302
	SRR3591710	White floral bud	43.841
	SRR3591711	White flower	53.343
	SRR3591712	Green floral bud	17.781
	SRR3591713	Yellow flower	76.222
SRP173429	SRR8316895	Juvenile bud stage	3.525
	SRR8316896	Juvenile bud stage	7.891
	SRR8316897	Juvenile bud stage	7.785
	SRR8316894	Third green stage	2.937
	SRR8316900	Third green stage	9.758
	SRR8316901	Third green stage	9.944
	SRR8316898	Complete white stage	11.167
	SRR8316899	Complete white stage	17.432
	SRR8316903	Complete white stage	17.081
	SRR8316902	Silver flowering stage	18.527
	SRR8316904	Silver flowering stage	25.050
	SRR8316905	Silver flowering stage	13.005
	SRR8316906	Gold flowering stage	43.189
	SRR8316907	Gold flowering stage	32.796
	SRR8316908	Gold flowering stage	60.749
SRP132670	SRR6706286	Control	7.443
	SRR6706287	Light intensity 50%	8.176
	SRR6706288	Light intensity 20%	8.776
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.356
	CNS0095593	Slightly white alabastrum(diploid) 2	9.535
	CNS0095594	Slightly white alabastrum(diploid) 3	7.355
	CNS0095595	Whole white alabastrum(diploid) 2	10.694
	CNS0095596	Whole white alabastrum(diploid) 3	8.622
	CNS0095597	Whole white alabastrum(diploid) 4	9.381
	CNS0095598	Silvery flower (diploied) 1	11.307
	CNS0095599	Silvery flower (diploied) 2	14.738
	CNS0095600	Silvery flower (diploied) 3	17.765
	CNS0095601	Golden flower (diploid) 1	18.192
	CNS0095602	Golden flower (diploid) 2	16.838
	CNS0095603	Golden flower (diploid) 3	17.135
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.995
	CNS0095605	Slightly white alabastrum(tetraploid) 2	17.766
	CNS0095606	Slightly white alabastrum(tetraploid) 3	24.007
	CNS0095607	Whole white alabastrum(tetraploid) 1	20.917
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.595
	CNS0095609	Whole white alabastrum(tetraploid) 3	25.293
	CNS0095610	Silvery flower (tetraploid) 1	55.196
	CNS0095611	Silvery flower (tetraploid) 2	41.822
	CNS0095612	Silvery flower (tetraploid) 3	56.417
	CNS0095613	Golden flower (tetraploid) 1	86.343
	CNS0095614	Golden flower (tetraploid) 2	61.786
	CNS0095615	Golden flower (tetraploid) 3	82.899
CRA001975	CRR073297	Stem 1	6.355
	CRR073298	Stem 2	5.364
	CRR073299	Stem 3	4.775
	CRR073300	Leaf 1	9.341
	CRR073301	Leaf 2	7.779
	CRR073302	Leaf 3	5.798
	CRR073303	Juvenile bud 1	8.095
	CRR073304	Juvenile bud 2	10.265
	CRR073305	Juvenile bud 3	4.193
	CRR073306	Third green 1	20.607
	CRR073307	Third green 2	15.503
	CRR073308	Third green 3	18.787
	CRR073309	Second white 1	13.766
	CRR073310	Second white 2	25.052
	CRR073311	Second white 3	21.511
	CRR073312	Silver flowering 1	20.343
	CRR073313	Silver flowering 2	13.313
	CRR073314	Silver flowering 3	16.114
	CRR073315	Gold flowering 1	6.665
	CRR073316	Gold flowering 2	8.607
	CRR073317	Gold flowering 3	1.792
	CRR073318	Tawny withering 1	6.362
	CRR073319	Tawny withering 2	8.272
	CRR073320	Tawny withering 3	5.822