Gene detail

Detail information of GWHGAAZE033643

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	YP_008592707.1	1.134E-161	ribosomal protein L2 (chloroplast) [Berberis bealei]
COG	YP_007099147.1	4E-83	ribosomal protein L2, bacterial/organellar
Swissprot	tr\|A0A398\|RK2B_COFAR	7E-152	50S ribosomal protein L2-B, chloroplastic
trEMBL	tr\|T1WMD4\|T1WMD4_BERBE	4E-162	50S ribosomal protein L2, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_01320}
TAIR10	ATCG01310.1	4E-115	ribosomal protein L2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000106	gene	13453	14838	-
GWHAAZE00000106	mRNA	13453	14838	-
GWHAAZE00000106	exon	13453	13881	-
GWHAAZE00000106	exon	14443	14838	-
GWHAAZE00000106	CDS	14443	14838	-
GWHAAZE00000106	CDS	13453	13881	-

Transcript Sequence
>GWHTAAZE033682 ATGGCAATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGGACCGCAAACGGTCAAGTAAAACCCAACCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGGAATGAAAAAAACATATATGGCAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATCCATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATACATTTTACATCCCAGAGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGATATCATCATCTACATCCAGAAAGCTGTATGCTTTGGAAGAAGCTTGTACAGTTTGGGAAGGGGTTTTGATTGATCAAAAAGAAGAATCTACTTCAACCAATATGCCCTTAGGCACGGCCATACATAACATAGAAATGACACTTGGAAAGGGTGGACAATTAGCTAGAGCGGCGGGTGCTGTAGCAAAACTGATTTCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTAGGGTGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAGCGTTGGCTAGGTAAGCGTCCTGTAGTAAGGGGAGTAGTTATGAACCCTGTAGACCATCCCCCACGGGGGTGGGGAGGGGAAGGCCCCAATTGGTAG

Network for GWHGAAZE033643

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00181.24	Ribosomal_L2	40	116	3.00E-29
PF03947.19	Ribosomal_L2_C	166	266	3.40E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02886	RP-L2, MRPL2, rplB	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.380
	SRR3591706	second leaf	0.688
	SRR3591707	mature leaf	0.563
	SRR3591708	Shoot apex	1.417
	SRR3591709	Stem	0.109
	SRR3591710	White floral bud	0.270
	SRR3591711	White flower	0.362
	SRR3591712	Green floral bud	0.690
	SRR3591713	Yellow flower	0.410
SRP173429	SRR8316895	Juvenile bud stage	10.134
	SRR8316896	Juvenile bud stage	7.271
	SRR8316897	Juvenile bud stage	15.159
	SRR8316894	Third green stage	13.699
	SRR8316900	Third green stage	4.658
	SRR8316901	Third green stage	2.583
	SRR8316898	Complete white stage	3.626
	SRR8316899	Complete white stage	1.110
	SRR8316903	Complete white stage	4.086
	SRR8316902	Silver flowering stage	5.541
	SRR8316904	Silver flowering stage	4.440
	SRR8316905	Silver flowering stage	5.805
	SRR8316906	Gold flowering stage	1.149
	SRR8316907	Gold flowering stage	1.269
	SRR8316908	Gold flowering stage	1.337
SRP132670	SRR6706286	Control	0.810
	SRR6706287	Light intensity 50%	1.093
	SRR6706288	Light intensity 20%	0.562
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.962
	CNS0095593	Slightly white alabastrum(diploid) 2	17.161
	CNS0095594	Slightly white alabastrum(diploid) 3	18.448
	CNS0095595	Whole white alabastrum(diploid) 2	16.196
	CNS0095596	Whole white alabastrum(diploid) 3	13.415
	CNS0095597	Whole white alabastrum(diploid) 4	16.806
	CNS0095598	Silvery flower (diploied) 1	11.611
	CNS0095599	Silvery flower (diploied) 2	10.423
	CNS0095600	Silvery flower (diploied) 3	4.639
	CNS0095601	Golden flower (diploid) 1	13.044
	CNS0095602	Golden flower (diploid) 2	4.872
	CNS0095603	Golden flower (diploid) 3	5.226
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.862
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.935
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.096
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.823
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.060
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.412
	CNS0095610	Silvery flower (tetraploid) 1	3.210
	CNS0095611	Silvery flower (tetraploid) 2	5.082
	CNS0095612	Silvery flower (tetraploid) 3	4.048
	CNS0095613	Golden flower (tetraploid) 1	6.812
	CNS0095614	Golden flower (tetraploid) 2	2.999
	CNS0095615	Golden flower (tetraploid) 3	4.535
CRA001975	CRR073297	Stem 1	18.123
	CRR073298	Stem 2	17.248
	CRR073299	Stem 3	9.188
	CRR073300	Leaf 1	12.868
	CRR073301	Leaf 2	14.431
	CRR073302	Leaf 3	7.776
	CRR073303	Juvenile bud 1	12.539
	CRR073304	Juvenile bud 2	7.261
	CRR073305	Juvenile bud 3	9.194
	CRR073306	Third green 1	6.380
	CRR073307	Third green 2	4.897
	CRR073308	Third green 3	8.919
	CRR073309	Second white 1	2.938
	CRR073310	Second white 2	11.286
	CRR073311	Second white 3	13.995
	CRR073312	Silver flowering 1	6.000
	CRR073313	Silver flowering 2	3.325
	CRR073314	Silver flowering 3	5.574
	CRR073315	Gold flowering 1	41.310
	CRR073316	Gold flowering 2	30.741
	CRR073317	Gold flowering 3	9.672
	CRR073318	Tawny withering 1	9.554
	CRR073319	Tawny withering 2	13.630
	CRR073320	Tawny withering 3	7.167