Detail information of GWHGAAZE033641


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD29931.17.29683E-82ribosomal protein S3 (chloroplast) [Lonicera japonica]
COGYP_003198921.12E-3230S ribosomal protein S3
Swissprottr|Q332T8|RR3_LACSA7E-7330S ribosomal protein S3, chloroplastic
trEMBLtr|D3WBU6|D3WBU6_LONJA3E-8230S ribosomal protein S3, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01309, ECO:0000256|RuleBase:RU003626}
TAIR10ATCG00800.19E-54structural constituent of ribosome

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000106gene1177612144-
GWHAAZE00000106mRNA1177612144-
GWHAAZE00000106exon1177612144-
GWHAAZE00000106CDS1177612144-
Transcript Sequence

Network for GWHGAAZE033641

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0205GO:0006412 translation GOslim:biological_process
map03010 Ribosome
GO:0015935 small ribosomal subunit GOslim:cellular_component
GO:0003735 structural constituent of ribosome GOslim:molecular_function
GO:0015934 large ribosomal subunit GOslim:cellular_component
GO:0019843 rRNA binding GOslim:molecular_function
map03010 Ribosome
GO:0003723 RNA binding GOslim:molecular_function
map03020 RNA polymerase
GO:0006351 transcription, DNA-templated GOslim:biological_process
GO:0003899 DNA-directed 5'-3' RNA polymerase activity GOslim:molecular_function


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00189.21Ribosomal_S3_C351174.20E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02982RP-S3, rpsC Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf2.870
SRR3591706second leaf5.228
SRR3591707mature leaf4.947
SRR3591708Shoot apex8.828
SRR3591709Stem3.657
SRR3591710White floral bud2.200
SRR3591711White flower3.050
SRR3591712Green floral bud3.157
SRR3591713Yellow flower3.527
SRP173429 SRR8316895Juvenile bud stage 18.783
SRR8316896Juvenile bud stage 10.712
SRR8316897Juvenile bud stage 19.384
SRR8316894Third green stage 23.041
SRR8316900Third green stage 5.980
SRR8316901Third green stage 4.897
SRR8316898Complete white stage 6.198
SRR8316899Complete white stage 3.125
SRR8316903Complete white stage 7.974
SRR8316902Silver flowering stage9.561
SRR8316904Silver flowering stage11.722
SRR8316905Silver flowering stage10.376
SRR8316906Gold flowering stage 2.472
SRR8316907Gold flowering stage 1.754
SRR8316908Gold flowering stage 5.234
SRP132670SRR6706286Control0.367
SRR6706287Light intensity 50%0.390
SRR6706288Light intensity 20%0.246
CNP0000432CNS0095592Slightly white alabastrum(diploid) 123.675
CNS0095593Slightly white alabastrum(diploid) 217.378
CNS0095594Slightly white alabastrum(diploid) 322.117
CNS0095595Whole white alabastrum(diploid) 219.068
CNS0095596Whole white alabastrum(diploid) 317.012
CNS0095597Whole white alabastrum(diploid) 417.655
CNS0095598Silvery flower (diploied) 114.458
CNS0095599Silvery flower (diploied) 210.311
CNS0095600Silvery flower (diploied) 39.159
CNS0095601Golden flower (diploid) 114.377
CNS0095602Golden flower (diploid) 29.445
CNS0095603Golden flower (diploid) 38.821
CNS0095604Slightly white alabastrum(tetraploid) 121.334
CNS0095605Slightly white alabastrum(tetraploid) 218.392
CNS0095606Slightly white alabastrum(tetraploid) 314.244
CNS0095607Whole white alabastrum(tetraploid) 113.240
CNS0095608Whole white alabastrum(tetraploid) 217.274
CNS0095609Whole white alabastrum(tetraploid) 311.361
CNS0095610Silvery flower (tetraploid) 18.379
CNS0095611Silvery flower (tetraploid) 212.406
CNS0095612Silvery flower (tetraploid) 37.404
CNS0095613Golden flower (tetraploid) 19.749
CNS0095614Golden flower (tetraploid) 26.913
CNS0095615Golden flower (tetraploid) 311.486
CRA001975CRR073297Stem 16.268
CRR073298Stem 211.414
CRR073299Stem 33.687
CRR073300Leaf 17.109
CRR073301Leaf 26.661
CRR073302Leaf 35.781
CRR073303Juvenile bud 15.110
CRR073304Juvenile bud 22.015
CRR073305Juvenile bud 32.438
CRR073306Third green 13.331
CRR073307Third green 21.688
CRR073308Third green 32.819
CRR073309Second white 11.239
CRR073310Second white 25.193
CRR073311Second white 38.870
CRR073312Silver flowering 12.680
CRR073313Silver flowering 20.911
CRR073314Silver flowering 33.016
CRR073315Gold flowering 114.013
CRR073316Gold flowering 214.703
CRR073317Gold flowering 34.268
CRR073318Tawny withering 14.471
CRR073319Tawny withering 22.386
CRR073320Tawny withering 33.096