Detail information of GWHGAAZE033562


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010655028.18.5897E-137PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1 [Vitis vinifera]
Swissprottr|Q9FWS3|C3H16_ARATH1E-69Zinc finger CCCH domain-containing protein 16
trEMBLtr|A0A068V326|A0A068V326_COFCA3E-134Coffea canephora DH200=94 genomic scaffold, scaffold_81 {ECO:0000313|EMBL:CDP14268.1}
TAIR10AT1G75340.22E-60Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000108gene20149172027250-
GWHAAZE00000108mRNA20149172027250-
GWHAAZE00000108exon20149172014955-
GWHAAZE00000108exon20154962015574-
GWHAAZE00000108exon20184962018721-
GWHAAZE00000108exon20193932019493-
GWHAAZE00000108exon20195712019836-
GWHAAZE00000108exon20199572020050-
GWHAAZE00000108exon20219982022093-
GWHAAZE00000108exon20221752022272-
GWHAAZE00000108exon20224452022652-
GWHAAZE00000108exon20271852027250-
GWHAAZE00000108five_prime_UTR20272292027250-
GWHAAZE00000108CDS20271852027228-
GWHAAZE00000108CDS20224452022652-
GWHAAZE00000108CDS20221752022272-
GWHAAZE00000108CDS20219982022093-
GWHAAZE00000108CDS20199572020050-
GWHAAZE00000108CDS20195712019836-
GWHAAZE00000108CDS20193932019493-
GWHAAZE00000108CDS20184962018721-
GWHAAZE00000108CDS20154962015574-
GWHAAZE00000108CDS20149172014955-
Transcript Sequence

Network for GWHGAAZE033562

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.25zf-CCCH3263.50E-09
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
K14321NUPL2, NUP42, CG1 RNA transport map03013

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf11.816
SRR3591706second leaf7.260
SRR3591707mature leaf10.777
SRR3591708Shoot apex13.659
SRR3591709Stem19.291
SRR3591710White floral bud14.205
SRR3591711White flower15.966
SRR3591712Green floral bud15.124
SRR3591713Yellow flower14.414
SRP173429 SRR8316895Juvenile bud stage 13.951
SRR8316896Juvenile bud stage 15.435
SRR8316897Juvenile bud stage 6.143
SRR8316894Third green stage 5.469
SRR8316900Third green stage 12.017
SRR8316901Third green stage 15.129
SRR8316898Complete white stage 5.657
SRR8316899Complete white stage 17.058
SRR8316903Complete white stage 8.137
SRR8316902Silver flowering stage8.272
SRR8316904Silver flowering stage9.794
SRR8316905Silver flowering stage3.484
SRR8316906Gold flowering stage 12.603
SRR8316907Gold flowering stage 13.572
SRR8316908Gold flowering stage 11.126
SRP132670SRR6706286Control19.537
SRR6706287Light intensity 50%19.136
SRR6706288Light intensity 20%17.326
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.800
CNS0095593Slightly white alabastrum(diploid) 213.677
CNS0095594Slightly white alabastrum(diploid) 312.438
CNS0095595Whole white alabastrum(diploid) 212.881
CNS0095596Whole white alabastrum(diploid) 38.818
CNS0095597Whole white alabastrum(diploid) 410.874
CNS0095598Silvery flower (diploied) 121.213
CNS0095599Silvery flower (diploied) 214.835
CNS0095600Silvery flower (diploied) 310.924
CNS0095601Golden flower (diploid) 116.914
CNS0095602Golden flower (diploid) 211.376
CNS0095603Golden flower (diploid) 312.434
CNS0095604Slightly white alabastrum(tetraploid) 113.454
CNS0095605Slightly white alabastrum(tetraploid) 211.805
CNS0095606Slightly white alabastrum(tetraploid) 316.528
CNS0095607Whole white alabastrum(tetraploid) 110.412
CNS0095608Whole white alabastrum(tetraploid) 26.312
CNS0095609Whole white alabastrum(tetraploid) 313.468
CNS0095610Silvery flower (tetraploid) 117.928
CNS0095611Silvery flower (tetraploid) 212.083
CNS0095612Silvery flower (tetraploid) 316.353
CNS0095613Golden flower (tetraploid) 112.027
CNS0095614Golden flower (tetraploid) 213.312
CNS0095615Golden flower (tetraploid) 39.489
CRA001975CRR073297Stem 122.593
CRR073298Stem 219.238
CRR073299Stem 318.639
CRR073300Leaf 122.847
CRR073301Leaf 219.467
CRR073302Leaf 313.988
CRR073303Juvenile bud 112.437
CRR073304Juvenile bud 211.580
CRR073305Juvenile bud 312.472
CRR073306Third green 15.199
CRR073307Third green 24.617
CRR073308Third green 35.166
CRR073309Second white 15.018
CRR073310Second white 26.613
CRR073311Second white 36.985
CRR073312Silver flowering 15.729
CRR073313Silver flowering 26.469
CRR073314Silver flowering 37.244
CRR073315Gold flowering 110.498
CRR073316Gold flowering 215.559
CRR073317Gold flowering 36.638
CRR073318Tawny withering 114.881
CRR073319Tawny withering 215.030
CRR073320Tawny withering 317.676