Detail information of GWHGAAZE033551


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010656852.10PREDICTED: villin-4 [Vitis vinifera]
Swissprottr|O65570|VILI4_ARATH0Villin-4 {ECO:0000303|PubMed:10631247}
trEMBLtr|D7SQC6|D7SQC6_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI17857.3}
TAIR10AT4G30160.10villin 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000108gene12385561256662-
GWHAAZE00000108mRNA12385561256662-
GWHAAZE00000108exon12566071256662-
GWHAAZE00000108exon12563051256404-
GWHAAZE00000108exon12536581253726-
GWHAAZE00000108exon12533391253566-
GWHAAZE00000108exon12526461252823-
GWHAAZE00000108exon12524261252558-
GWHAAZE00000108exon12518051251967-
GWHAAZE00000108exon12513041251451-
GWHAAZE00000108exon12510731251176-
GWHAAZE00000108exon12497681249923-
GWHAAZE00000108exon12485101248578-
GWHAAZE00000108exon12483361248404-
GWHAAZE00000108exon12480891248226-
GWHAAZE00000108exon12467791246907-
GWHAAZE00000108exon12461621246312-
GWHAAZE00000108exon12460091246019-
GWHAAZE00000108exon12452081245348-
GWHAAZE00000108exon12445961244721-
GWHAAZE00000108exon12395251239843-
GWHAAZE00000108exon12387501238952-
GWHAAZE00000108exon12385561238669-
GWHAAZE00000108CDS12566071256662-
GWHAAZE00000108CDS12563051256404-
GWHAAZE00000108CDS12536581253726-
GWHAAZE00000108CDS12533391253566-
GWHAAZE00000108CDS12526461252823-
GWHAAZE00000108CDS12524261252558-
GWHAAZE00000108CDS12518051251967-
GWHAAZE00000108CDS12513041251451-
GWHAAZE00000108CDS12510731251176-
GWHAAZE00000108CDS12497681249923-
GWHAAZE00000108CDS12485101248578-
GWHAAZE00000108CDS12483361248404-
GWHAAZE00000108CDS12480891248226-
GWHAAZE00000108CDS12467791246907-
GWHAAZE00000108CDS12461621246312-
GWHAAZE00000108CDS12460091246019-
GWHAAZE00000108CDS12452081245348-
GWHAAZE00000108CDS12445961244721-
GWHAAZE00000108CDS12395251239843-
GWHAAZE00000108CDS12387501238952-
GWHAAZE00000108CDS12385561238669-
Transcript Sequence

Network for GWHGAAZE033551

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00626.23Gelsolin351113.00E-13
PF00626.23Gelsolin1491972.00E-08
PF00626.23Gelsolin2623319.10E-08
PF00626.23Gelsolin6377106.90E-11
PF02209.20VHP8999341.10E-14
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05768GSN Regulation of actin cytoskeleton map04810
Fc gamma R-mediated phagocytosismap04666

Gene Ontology

GO term OntologyName
GO:0007010biological_processcytoskeleton organization
GO:0051015molecular_functionactin filament binding
GO:0003779molecular_functionactin binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf21.017
SRR3591706second leaf9.125
SRR3591707mature leaf3.432
SRR3591708Shoot apex11.936
SRR3591709Stem11.455
SRR3591710White floral bud21.596
SRR3591711White flower9.515
SRR3591712Green floral bud25.192
SRR3591713Yellow flower6.456
SRP173429 SRR8316895Juvenile bud stage 8.081
SRR8316896Juvenile bud stage 15.286
SRR8316897Juvenile bud stage 6.955
SRR8316894Third green stage 8.315
SRR8316900Third green stage 22.681
SRR8316901Third green stage 21.001
SRR8316898Complete white stage 3.823
SRR8316899Complete white stage 10.378
SRR8316903Complete white stage 8.646
SRR8316902Silver flowering stage3.651
SRR8316904Silver flowering stage6.237
SRR8316905Silver flowering stage2.294
SRR8316906Gold flowering stage 4.133
SRR8316907Gold flowering stage 5.727
SRR8316908Gold flowering stage 3.442
SRP132670SRR6706286Control11.569
SRR6706287Light intensity 50%12.839
SRR6706288Light intensity 20%11.078
CNP0000432CNS0095592Slightly white alabastrum(diploid) 19.279
CNS0095593Slightly white alabastrum(diploid) 27.169
CNS0095594Slightly white alabastrum(diploid) 39.659
CNS0095595Whole white alabastrum(diploid) 211.535
CNS0095596Whole white alabastrum(diploid) 312.181
CNS0095597Whole white alabastrum(diploid) 48.780
CNS0095598Silvery flower (diploied) 12.625
CNS0095599Silvery flower (diploied) 23.398
CNS0095600Silvery flower (diploied) 35.716
CNS0095601Golden flower (diploid) 12.857
CNS0095602Golden flower (diploid) 24.428
CNS0095603Golden flower (diploid) 34.469
CNS0095604Slightly white alabastrum(tetraploid) 116.668
CNS0095605Slightly white alabastrum(tetraploid) 213.193
CNS0095606Slightly white alabastrum(tetraploid) 310.093
CNS0095607Whole white alabastrum(tetraploid) 117.803
CNS0095608Whole white alabastrum(tetraploid) 221.100
CNS0095609Whole white alabastrum(tetraploid) 323.315
CNS0095610Silvery flower (tetraploid) 16.010
CNS0095611Silvery flower (tetraploid) 23.677
CNS0095612Silvery flower (tetraploid) 39.711
CNS0095613Golden flower (tetraploid) 13.200
CNS0095614Golden flower (tetraploid) 24.493
CNS0095615Golden flower (tetraploid) 38.347
CRA001975CRR073297Stem 114.197
CRR073298Stem 212.848
CRR073299Stem 39.985
CRR073300Leaf 117.562
CRR073301Leaf 217.363
CRR073302Leaf 38.834
CRR073303Juvenile bud 113.697
CRR073304Juvenile bud 211.189
CRR073305Juvenile bud 316.326
CRR073306Third green 110.798
CRR073307Third green 211.821
CRR073308Third green 311.608
CRR073309Second white 15.559
CRR073310Second white 26.951
CRR073311Second white 36.300
CRR073312Silver flowering 19.758
CRR073313Silver flowering 212.882
CRR073314Silver flowering 38.724
CRR073315Gold flowering 14.992
CRR073316Gold flowering 25.511
CRR073317Gold flowering 33.446
CRR073318Tawny withering 115.498
CRR073319Tawny withering 211.896
CRR073320Tawny withering 314.652