Gene detail

Detail information of GWHGAAZE033541

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011079285.1	3.23E-172	PREDICTED: homogentisate phytyltransferase 1, chloroplastic-like isoform X1 [Sesamum indicum]
COG	YP_001865470.1	7E-58	tocopherol phytyltransferase
Swissprot	tr\|Q8VWJ1\|HPT1_ARATH	2E-160	Homogentisate phytyltransferase 1, chloroplastic (Precursor)
trEMBL	tr\|B6CPP6\|B6CPP6_SESIN	1E-170	Homogentisic acid phytyltransferase {ECO:0000313\|EMBL:ACB42447.1}
TAIR10	AT2G18950.1	1E-129	homogentisate phytyltransferase 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000108	gene	819154	831893	+
GWHAAZE00000108	mRNA	819154	831893	+
GWHAAZE00000108	exon	819154	819329	+
GWHAAZE00000108	exon	819474	819585	+
GWHAAZE00000108	exon	820092	820166	+
GWHAAZE00000108	exon	825077	825160	+
GWHAAZE00000108	exon	826086	826175	+
GWHAAZE00000108	exon	827756	827857	+
GWHAAZE00000108	exon	828850	828945	+
GWHAAZE00000108	exon	829620	829691	+
GWHAAZE00000108	exon	829783	829878	+
GWHAAZE00000108	exon	831711	831893	+
GWHAAZE00000108	CDS	819154	819329	+
GWHAAZE00000108	CDS	819474	819585	+
GWHAAZE00000108	CDS	820092	820166	+
GWHAAZE00000108	CDS	825077	825160	+
GWHAAZE00000108	CDS	826086	826175	+
GWHAAZE00000108	CDS	827756	827857	+
GWHAAZE00000108	CDS	828850	828945	+
GWHAAZE00000108	CDS	829620	829691	+
GWHAAZE00000108	CDS	829783	829878	+
GWHAAZE00000108	CDS	831711	831893	+

Transcript Sequence
>GWHTAAZE033580 ATGCATCAAAATGTTGGAAGTTTTGATAAAAGATACACACTCTATCCGACGCGCAAAACAGTGCATAAGGCGAATTCGGCGTCCGAATACCCACTTGAATCTGATCCTGGAACTGGAGCCTTTACTCCCAAGAACCCTAGGAAACCTGTGCAAGATGCCTTAGATGCTTTCTACAGAGGACTTACACTTCTTCTCTCTGAACAGGCATTGAGCATAATTTCAGTTTCTCTACTTGCAGTTGAAAATCTCTCAGATTTTTCTCCGCTGTTCATCACTGGGGTGTTGGAGGCCATTGTTGCTGCCCTCATGATGAATATATATATTGTTGGCTTAAATCAGTTGTCTGACATAGATATAGACAAGGTTAACAAGCCGTATCTTCCGTTGGCATCGGGGGAATATTCCGTCACAACTGGTGTCATGATTGTTTCATCTTTTGCTATTATGAGTTTTTGGCTTGGATGGGTTGTTGGATCCTGGCCGCTGTTTTGGGCTTTGTTCATCAGTTTTGTACTTGGAACTGCATATTCTATCAATATACCTCTTTTGAGATGGAAGAGATTTGCCTTAGTTGCAGCAATGTGTATCCTGGCTGTACGGGCAGTGATTGTTCAAATTGCATTTTATCTGCACATGCAGACTTTTGTGTATGGAAGACCAATTGCCTTTTCGAAGCCAGTGATTTTCGCAACTGGATTCATGAGTTTCTTTTCTGTTGTCATAGCATTATTTAAGGATATACCAGATATCGTTGGGGATAAGATATATGGCATTCGATCCTTTACCGTTCGATTGGGTCAAGAAAGGGTGTTTTGGATTTGTATTTCGCTGCTTGAAATGGCATACATTGTGGCTATATTAGTTGGAGCATCGTCTTCTTGCCTTTGGAGCAAATGCGTAACGGTGGTTGGTCATGTCGCGCTGGCTACATTACTTTGGGACCGCACCAAATCAATAGACTTTCAGAGCAAAACTTCACTAACTACGTTCTACATGTTTATTTGGAAGGTAACCAATCCCTGTTTTTGTTCTAAATTACATTTAGCAAAGAAGCTGATACCTTATGATTCAAGCCTGTGGACATGA

Network for GWHGAAZE033541

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01040.19	UbiA	78	336	1.30E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K09833	HPT, HGGT, ubiA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

GO term	Ontology	Name
GO:0016021	cellular_component	integral component of membrane
GO:0016765	molecular_function	transferase activity, transferring alkyl or aryl (other than methyl) groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	19.833
	SRR3591706	second leaf	62.486
	SRR3591707	mature leaf	53.552
	SRR3591708	Shoot apex	48.262
	SRR3591709	Stem	22.183
	SRR3591710	White floral bud	28.464
	SRR3591711	White flower	28.217
	SRR3591712	Green floral bud	40.494
	SRR3591713	Yellow flower	16.430
SRP173429	SRR8316895	Juvenile bud stage	25.388
	SRR8316896	Juvenile bud stage	28.680
	SRR8316897	Juvenile bud stage	18.450
	SRR8316894	Third green stage	13.651
	SRR8316900	Third green stage	42.717
	SRR8316901	Third green stage	38.241
	SRR8316898	Complete white stage	13.140
	SRR8316899	Complete white stage	47.376
	SRR8316903	Complete white stage	17.751
	SRR8316902	Silver flowering stage	9.948
	SRR8316904	Silver flowering stage	13.626
	SRR8316905	Silver flowering stage	7.081
	SRR8316906	Gold flowering stage	21.846
	SRR8316907	Gold flowering stage	19.134
	SRR8316908	Gold flowering stage	19.261
SRP132670	SRR6706286	Control	36.945
	SRR6706287	Light intensity 50%	41.142
	SRR6706288	Light intensity 20%	43.725
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	32.893
	CNS0095593	Slightly white alabastrum(diploid) 2	30.930
	CNS0095594	Slightly white alabastrum(diploid) 3	27.920
	CNS0095595	Whole white alabastrum(diploid) 2	32.939
	CNS0095596	Whole white alabastrum(diploid) 3	31.968
	CNS0095597	Whole white alabastrum(diploid) 4	28.869
	CNS0095598	Silvery flower (diploied) 1	35.136
	CNS0095599	Silvery flower (diploied) 2	39.613
	CNS0095600	Silvery flower (diploied) 3	34.582
	CNS0095601	Golden flower (diploid) 1	31.660
	CNS0095602	Golden flower (diploid) 2	33.413
	CNS0095603	Golden flower (diploid) 3	30.293
	CNS0095604	Slightly white alabastrum(tetraploid) 1	38.720
	CNS0095605	Slightly white alabastrum(tetraploid) 2	38.484
	CNS0095606	Slightly white alabastrum(tetraploid) 3	65.787
	CNS0095607	Whole white alabastrum(tetraploid) 1	21.189
	CNS0095608	Whole white alabastrum(tetraploid) 2	20.658
	CNS0095609	Whole white alabastrum(tetraploid) 3	60.059
	CNS0095610	Silvery flower (tetraploid) 1	27.320
	CNS0095611	Silvery flower (tetraploid) 2	37.456
	CNS0095612	Silvery flower (tetraploid) 3	27.676
	CNS0095613	Golden flower (tetraploid) 1	17.886
	CNS0095614	Golden flower (tetraploid) 2	20.128
	CNS0095615	Golden flower (tetraploid) 3	12.576
CRA001975	CRR073297	Stem 1	44.786
	CRR073298	Stem 2	36.422
	CRR073299	Stem 3	41.379
	CRR073300	Leaf 1	38.678
	CRR073301	Leaf 2	33.277
	CRR073302	Leaf 3	39.116
	CRR073303	Juvenile bud 1	37.293
	CRR073304	Juvenile bud 2	22.448
	CRR073305	Juvenile bud 3	26.292
	CRR073306	Third green 1	16.930
	CRR073307	Third green 2	7.056
	CRR073308	Third green 3	10.124
	CRR073309	Second white 1	10.058
	CRR073310	Second white 2	11.001
	CRR073311	Second white 3	10.802
	CRR073312	Silver flowering 1	7.906
	CRR073313	Silver flowering 2	6.934
	CRR073314	Silver flowering 3	8.987
	CRR073315	Gold flowering 1	28.350
	CRR073316	Gold flowering 2	39.121
	CRR073317	Gold flowering 3	25.090
	CRR073318	Tawny withering 1	10.489
	CRR073319	Tawny withering 2	15.068
	CRR073320	Tawny withering 3	11.685