Gene detail

Detail information of GWHGAAZE033538

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006372127.1	3.2651E-147	hypothetical protein POPTR_0018s12000g [Populus trichocarpa]
COG	YP_007146068.1	7E-38	chitinase
trEMBL	tr\|U5FI21\|U5FI21_POPTR	1E-147	Uncharacterized protein {ECO:0000313\|EMBL:ERP49924.1}
TAIR10	AT4G19810.1	2E-69	Glycosyl hydrolase family protein with chitinase insertion domain

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000108	gene	539159	540190	-
GWHAAZE00000108	mRNA	539159	540190	-
GWHAAZE00000108	exon	539159	540190	-
GWHAAZE00000108	CDS	539159	540190	-

Transcript Sequence
>GWHTAAZE033577 ATGAAAGGAGCTTATTGGCCTTCATGGGCTAAGGATTTCCCACCATCCACCATTGAAACGTCGCTATTTACTCACGTCTACTATGCGTTCCTTATGCCTAACAAAGACACGTACAAATTTGACATCGATCATTCAACTGCTGCAAAGCTTATCAACTTCACGTCAACTCTCCATTCAATGAAACCGCCGGTAAAAACGCTATTTTCAATCGGAGGGTGGAGCGCTGGCCATGTGATCTTTTCTCAAATGGCTTCAAGTTTGTGTTGGCGTAAAAATTTCATTGACTCTGCTGTAGAGGTGGCAAGAAAATTTGGGTTTGACGGGATTGATCTTGATTGGGAGTTCCCTCAAACTCCTACTGATATGGAAAATTTGGGTATTTTATTAGGTGAATGGCGGGCCACAATAACAACGGAGGCCAGCAGTACAGGCAAGCTTCCACTTTTACTATCTGCGGCCACGTACTTTTCAGTAAAAATTCCGTGGGAAGAAAACCGAATGTTCCCTGTTGATTCGATCACTACAAATTTAGATTGGATTAATGCCATGTGTTTTGATTATAATGGGCAATGGGACACTTCAACAACAGGGGCACATGCGGCGTTATTTGATCCAAAAAGTAATACGATGAGCACAAGTTATGGACTTGAAACATGGATCCAGGCTGGGCTTCCAAAGAACAAGTTGATTATGGGCTTACCACTATACGGTCGGACGTGGACTCTCAAGGATCCAAACCTGAATGGAGTCGGAGCCCCGGCTATAGCTGTGGGCCCCGGAAATGATGGGCAAATGCCTTATTCAGATGTGGTGATGTTTAATAAGCAAAATAATGCCACTGAGGTGTACGATGAGTCAACTGTGTCTGTGTATTCTGTAGCGCAAACTACATGGATTGGGTACGATAACAACATATCGACTAAGGTGAAAACTAAATATGCCAAGGACCTTCAAATTGGTGGGTATTTCTTTTGGTCCGTGGATCAAGATTATATGTGGAAAATCTCCAAAACAGGTATATATGATTATTAA

Network for GWHGAAZE033538

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00704.29	Glyco_hydro_18	4	330	1.40E-73

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01183	E3.2.1.14	Metabolic pathways	map01100
K01183	E3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0008061	molecular_function	chitin binding
GO:0004553	molecular_function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	27.767
	SRR3591706	second leaf	11.765
	SRR3591707	mature leaf	17.973
	SRR3591708	Shoot apex	22.098
	SRR3591709	Stem	42.158
	SRR3591710	White floral bud	37.344
	SRR3591711	White flower	40.613
	SRR3591712	Green floral bud	36.230
	SRR3591713	Yellow flower	41.655
SRP173429	SRR8316895	Juvenile bud stage	9.297
	SRR8316896	Juvenile bud stage	12.440
	SRR8316897	Juvenile bud stage	12.133
	SRR8316894	Third green stage	5.975
	SRR8316900	Third green stage	19.030
	SRR8316901	Third green stage	17.713
	SRR8316898	Complete white stage	9.396
	SRR8316899	Complete white stage	23.432
	SRR8316903	Complete white stage	10.558
	SRR8316902	Silver flowering stage	7.146
	SRR8316904	Silver flowering stage	9.032
	SRR8316905	Silver flowering stage	4.660
	SRR8316906	Gold flowering stage	16.299
	SRR8316907	Gold flowering stage	18.423
	SRR8316908	Gold flowering stage	20.524
SRP132670	SRR6706286	Control	15.809
	SRR6706287	Light intensity 50%	15.459
	SRR6706288	Light intensity 20%	15.345
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	17.976
	CNS0095593	Slightly white alabastrum(diploid) 2	18.112
	CNS0095594	Slightly white alabastrum(diploid) 3	18.724
	CNS0095595	Whole white alabastrum(diploid) 2	19.296
	CNS0095596	Whole white alabastrum(diploid) 3	25.462
	CNS0095597	Whole white alabastrum(diploid) 4	23.103
	CNS0095598	Silvery flower (diploied) 1	15.204
	CNS0095599	Silvery flower (diploied) 2	11.539
	CNS0095600	Silvery flower (diploied) 3	20.994
	CNS0095601	Golden flower (diploid) 1	16.317
	CNS0095602	Golden flower (diploid) 2	17.250
	CNS0095603	Golden flower (diploid) 3	17.533
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.275
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.851
	CNS0095606	Slightly white alabastrum(tetraploid) 3	16.370
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.206
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.607
	CNS0095609	Whole white alabastrum(tetraploid) 3	14.333
	CNS0095610	Silvery flower (tetraploid) 1	19.794
	CNS0095611	Silvery flower (tetraploid) 2	17.035
	CNS0095612	Silvery flower (tetraploid) 3	22.722
	CNS0095613	Golden flower (tetraploid) 1	14.460
	CNS0095614	Golden flower (tetraploid) 2	17.556
	CNS0095615	Golden flower (tetraploid) 3	16.869
CRA001975	CRR073297	Stem 1	15.335
	CRR073298	Stem 2	12.437
	CRR073299	Stem 3	10.316
	CRR073300	Leaf 1	17.318
	CRR073301	Leaf 2	15.135
	CRR073302	Leaf 3	11.065
	CRR073303	Juvenile bud 1	17.664
	CRR073304	Juvenile bud 2	9.991
	CRR073305	Juvenile bud 3	14.690
	CRR073306	Third green 1	9.862
	CRR073307	Third green 2	7.790
	CRR073308	Third green 3	7.380
	CRR073309	Second white 1	3.876
	CRR073310	Second white 2	8.455
	CRR073311	Second white 3	9.504
	CRR073312	Silver flowering 1	5.993
	CRR073313	Silver flowering 2	4.307
	CRR073314	Silver flowering 3	4.253
	CRR073315	Gold flowering 1	4.655
	CRR073316	Gold flowering 2	6.792
	CRR073317	Gold flowering 3	2.819
	CRR073318	Tawny withering 1	10.991
	CRR073319	Tawny withering 2	9.568
	CRR073320	Tawny withering 3	6.432