Gene detail

Detail information of GWHGAAZE033519

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008464995.1	0	PREDICTED: 26S protease regulatory subunit 8 homolog A [Cucumis melo]
COG	NP_577844.1	9E-128	proteasome-activating nucleotidase
Swissprot	tr\|Q9C5U3\|PRS8A_ARATH	0	26S protease regulatory subunit 8 homolog A
trEMBL	tr\|D7U0U9\|D7U0U9_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36245.3}
TAIR10	AT5G19990.1	0	regulatory particle triple-A ATPase 6A

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	1461170	1466593	+
GWHAAZE00000104	mRNA	1461170	1466593	+
GWHAAZE00000104	exon	1461170	1461367	+
GWHAAZE00000104	exon	1462877	1462974	+
GWHAAZE00000104	exon	1463424	1463648	+
GWHAAZE00000104	exon	1463747	1463809	+
GWHAAZE00000104	exon	1463923	1464086	+
GWHAAZE00000104	exon	1465316	1465472	+
GWHAAZE00000104	exon	1465602	1465700	+
GWHAAZE00000104	exon	1465978	1466088	+
GWHAAZE00000104	exon	1466453	1466593	+
GWHAAZE00000104	five_prime_UTR	1461170	1461210	+
GWHAAZE00000104	CDS	1461211	1461367	+
GWHAAZE00000104	CDS	1462877	1462974	+
GWHAAZE00000104	CDS	1463424	1463648	+
GWHAAZE00000104	CDS	1463747	1463809	+
GWHAAZE00000104	CDS	1463923	1464086	+
GWHAAZE00000104	CDS	1465316	1465472	+
GWHAAZE00000104	CDS	1465602	1465700	+
GWHAAZE00000104	CDS	1465978	1466088	+
GWHAAZE00000104	CDS	1466453	1466593	+

Transcript Sequence
>GWHTAAZE033558 GGAGCATAGTAATCGTCTCTTTCAAGAAAAGGAGAAGAAACATGGCGACAGTAGAGATCGAGACGACGAAGGTGAAGCAAGGGGAGGGACTGAGGCAATATTATCTTCAACACATCCATGATCTTCAGCTTCAAGTTCGACAGAAAACTCACAATCTCAATCGCCTCGAAGCTCAGCGTAACGATCTCAATTCTAGAGTGAGGATGCTGAAGGAAGAGTTACAGCTGCTTCAGGAGCCTGGATCTTATGTTGGCGAAGTTGTTAAAGTAATGGGAAAATCTAAGGTTCTAGTTAAAGTTCATCCGGAGGGAAAATATGTAGTTGATATTGATAAAAGTATTGATATCACCAAGATCACACCATCAACTAGAGTTGCCCTCCGCAATGATAGCTATGTTCTTCATCTGGTTTTGCCCAGCAAAGTAGATCCTCTGGTCAATCTCATGAAAGTTGAAAAAGTTCCTGATTCAACTTATGACATGATTGGTGGTCTCGACCAGCAAATTAAAGAGATAAAGGAGGTTATTGAACTGCCAATCAAACATCCTGAGTTATTTGAGTCTCTTGGAATAGCCCAACCGAAGGGAGTCCTGCTTTATGGCCCACCAGGCACAGGAAAAACACTGTTGGCTAGGGCAGTGGCTCACCATACTGATTGTACTTTCATCAGAGTTTCTGGGTCTGAGCTAGTGCAGAAATATATTGGGGAAGGCTCTCGAATGGTGAGAGAACTTTTCGTTATGGCCAGGGAACATGCCCCATCAATCATATTTATGGATGAAATAGACAGTATTGGGTCTGCTCGTATGGAATCTGGAAGTGGGAATGGGGACAGTGAAGTGCAGAGGACGATGCTTGAGCTTCTCAACCAATTGGACGGATTTGAAGCATCCAACAAGATCAAGGTTTTGATGGCAACAAATCGTATTGATATTCTGGATCACGCCCTTCTCAGACCTGGCCGGATTGACAGGAAGATTGAATTCCCAAATCCCAATGGAGAGTCTCGGTGGGATATATTGAAAATTCATTCAAGAAGAATGAATTTGATGCGTGGGATTGATTTGAAAAAGATTGCGGAGAAGATGAACGGTGCTTCAGGTGCTGAGCTCAAGGCGGTGTGCACGGAAGCAGGGATGTTTGCATTGAGGGAGAGGAGGGTGCATGTAACGCAGGAAGATTTCGAGATGGCTGTGGCCAAGGTCATGAAGAAGGAGACTGAGAAGAACATGTCCCTCAGGAAGCTCTGGAAGTAG

Network for GWHGAAZE033519

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF16450.6	Prot_ATP_ID_OB	70	125	7.70E-09
PF00004.30	AAA	183	316	7.00E-43
PF17862.2	AAA_lid_3	340	382	1.10E-14

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03066	PSMC5, RPT6	Proteasome	map03050

Gene Ontology

GO term	Ontology	Name
GO:0030163	biological_process	protein catabolic process
GO:0005737	cellular_component	cytoplasm
GO:0005524	molecular_function	ATP binding
GO:0016787	molecular_function	hydrolase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	164.515
	SRR3591706	second leaf	82.593
	SRR3591707	mature leaf	69.982
	SRR3591708	Shoot apex	146.765
	SRR3591709	Stem	154.740
	SRR3591710	White floral bud	178.685
	SRR3591711	White flower	217.776
	SRR3591712	Green floral bud	193.711
	SRR3591713	Yellow flower	177.280
SRP173429	SRR8316895	Juvenile bud stage	111.422
	SRR8316896	Juvenile bud stage	160.478
	SRR8316897	Juvenile bud stage	80.999
	SRR8316894	Third green stage	67.932
	SRR8316900	Third green stage	208.051
	SRR8316901	Third green stage	193.413
	SRR8316898	Complete white stage	108.886
	SRR8316899	Complete white stage	301.329
	SRR8316903	Complete white stage	132.490
	SRR8316902	Silver flowering stage	85.145
	SRR8316904	Silver flowering stage	99.082
	SRR8316905	Silver flowering stage	48.816
	SRR8316906	Gold flowering stage	182.529
	SRR8316907	Gold flowering stage	181.034
	SRR8316908	Gold flowering stage	172.944
SRP132670	SRR6706286	Control	207.650
	SRR6706287	Light intensity 50%	210.405
	SRR6706288	Light intensity 20%	225.635
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	149.813
	CNS0095593	Slightly white alabastrum(diploid) 2	158.701
	CNS0095594	Slightly white alabastrum(diploid) 3	122.598
	CNS0095595	Whole white alabastrum(diploid) 2	138.637
	CNS0095596	Whole white alabastrum(diploid) 3	140.050
	CNS0095597	Whole white alabastrum(diploid) 4	122.436
	CNS0095598	Silvery flower (diploied) 1	119.794
	CNS0095599	Silvery flower (diploied) 2	116.793
	CNS0095600	Silvery flower (diploied) 3	185.978
	CNS0095601	Golden flower (diploid) 1	111.666
	CNS0095602	Golden flower (diploid) 2	151.107
	CNS0095603	Golden flower (diploid) 3	156.439
	CNS0095604	Slightly white alabastrum(tetraploid) 1	151.786
	CNS0095605	Slightly white alabastrum(tetraploid) 2	134.566
	CNS0095606	Slightly white alabastrum(tetraploid) 3	232.373
	CNS0095607	Whole white alabastrum(tetraploid) 1	96.485
	CNS0095608	Whole white alabastrum(tetraploid) 2	96.752
	CNS0095609	Whole white alabastrum(tetraploid) 3	205.391
	CNS0095610	Silvery flower (tetraploid) 1	194.531
	CNS0095611	Silvery flower (tetraploid) 2	178.748
	CNS0095612	Silvery flower (tetraploid) 3	141.783
	CNS0095613	Golden flower (tetraploid) 1	130.648
	CNS0095614	Golden flower (tetraploid) 2	153.553
	CNS0095615	Golden flower (tetraploid) 3	137.113
CRA001975	CRR073297	Stem 1	183.161
	CRR073298	Stem 2	175.310
	CRR073299	Stem 3	194.782
	CRR073300	Leaf 1	199.912
	CRR073301	Leaf 2	193.713
	CRR073302	Leaf 3	211.733
	CRR073303	Juvenile bud 1	237.743
	CRR073304	Juvenile bud 2	196.671
	CRR073305	Juvenile bud 3	224.426
	CRR073306	Third green 1	94.697
	CRR073307	Third green 2	87.639
	CRR073308	Third green 3	85.261
	CRR073309	Second white 1	114.972
	CRR073310	Second white 2	102.161
	CRR073311	Second white 3	84.727
	CRR073312	Silver flowering 1	70.368
	CRR073313	Silver flowering 2	74.907
	CRR073314	Silver flowering 3	67.990
	CRR073315	Gold flowering 1	91.728
	CRR073316	Gold flowering 2	110.405
	CRR073317	Gold flowering 3	82.727
	CRR073318	Tawny withering 1	140.441
	CRR073319	Tawny withering 2	117.924
	CRR073320	Tawny withering 3	133.666