Gene detail

Detail information of GWHGAAZE033516

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011073988.1	9.0901E-121	PREDICTED: 60S ribosomal protein L5-like [Sesamum indicum]
COG	NP_559765.1	1E-19	50S ribosomal protein L18
Swissprot	tr\|Q6UNT2\|RL5_CUCSA	5E-115	60S ribosomal protein L5
trEMBL	tr\|M0TK64\|M0TK64_MUSAM	2E-120	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr7P23780_001}
TAIR10	AT5G39740.2	1E-91	ribosomal protein L5 B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	1385959	1390367	-
GWHAAZE00000104	mRNA	1385959	1390367	-
GWHAAZE00000104	exon	1390296	1390367	-
GWHAAZE00000104	exon	1388712	1388757	-
GWHAAZE00000104	exon	1388516	1388607	-
GWHAAZE00000104	exon	1388083	1388209	-
GWHAAZE00000104	exon	1387923	1388002	-
GWHAAZE00000104	exon	1387716	1387832	-
GWHAAZE00000104	exon	1386204	1386275	-
GWHAAZE00000104	exon	1385959	1386051	-
GWHAAZE00000104	CDS	1390296	1390367	-
GWHAAZE00000104	CDS	1388712	1388757	-
GWHAAZE00000104	CDS	1388516	1388607	-
GWHAAZE00000104	CDS	1388083	1388209	-
GWHAAZE00000104	CDS	1387923	1388002	-
GWHAAZE00000104	CDS	1387716	1387832	-
GWHAAZE00000104	CDS	1386204	1386275	-
GWHAAZE00000104	CDS	1385959	1386051	-

Transcript Sequence
>GWHTAAZE033555 ATGCTAGGGTTTGATTATTGTTATACCTCTAGAATTGAGATCATTACGCTGAGCTTCGAGGCGATTGAGATCGCTTTTGTCAAATCCCAAACGACAAAGGCATACTTTAAGCTATCAGAGGGGAAGACAGATTACAGGGCCAGGATTCTTCTAATTAACCAGGACAAGAACAAGTACAACACTCCAAAGTACCGCTCTGTTGTTCGATTTACAAACAAGGATATTATTGCACAAATAGTATCTGCCAGCATTGCTGGTGATATGGTTCATGCTGCAGCCTATGCCCACGAGCTTCCTCGATATGGGCTTGAAGTAGGTCTCACCAATTATGCAGCAGCTTACTGTACTGGACTTCTATTGGCCCGTCGTGTCTTGAAAATGCATGAGATGGATGACGAATATCAAGGCAATGTGGCGGCAACTGGAGAGGATTTCTCAGTTGAACCAGCAGAGAGTAGAAGACCATTCCGCGCACTCCTTGACATCGGCCTTATTAGAACAACTACTGGGAACCGTGTTTTTGGTGCTCTCAAGGACTCCAAGAAGCTTGATGCCGAGGTTCACCGCAAATACGTTTATGGTGGCCATGTTGCCACGTATACGAAGACTTTGATGGAAGATGAGCCAGAGAAGTACCAAAGTCACTTCTCTTTGTACATCAAGAAAGGAATTCAACCAGATGGTGTGGAGGCAATGTAA

Network for GWHGAAZE033516

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17144.5	Ribosomal_L5e	39	180	1.80E-64
PF14204.7	Ribosomal_L18_c	185	232	2.30E-16

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02932	RP-L5e, RPL5	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome
GO:0008097	molecular_function	5S rRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.633
	SRR3591706	second leaf	10.873
	SRR3591707	mature leaf	3.590
	SRR3591708	Shoot apex	9.592
	SRR3591709	Stem	3.077
	SRR3591710	White floral bud	7.222
	SRR3591711	White flower	2.579
	SRR3591712	Green floral bud	19.511
	SRR3591713	Yellow flower	3.352
SRP173429	SRR8316895	Juvenile bud stage	7.755
	SRR8316896	Juvenile bud stage	4.843
	SRR8316897	Juvenile bud stage	4.321
	SRR8316894	Third green stage	1.856
	SRR8316900	Third green stage	2.552
	SRR8316901	Third green stage	2.166
	SRR8316898	Complete white stage	0.168
	SRR8316899	Complete white stage	1.027
	SRR8316903	Complete white stage	0.567
	SRR8316902	Silver flowering stage	0.149
	SRR8316904	Silver flowering stage	0.273
	SRR8316905	Silver flowering stage	0.088
	SRR8316906	Gold flowering stage	0.654
	SRR8316907	Gold flowering stage	0.093
	SRR8316908	Gold flowering stage	1.005
SRP132670	SRR6706286	Control	1.210
	SRR6706287	Light intensity 50%	5.790
	SRR6706288	Light intensity 20%	2.483
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.762
	CNS0095593	Slightly white alabastrum(diploid) 2	2.530
	CNS0095594	Slightly white alabastrum(diploid) 3	8.015
	CNS0095595	Whole white alabastrum(diploid) 2	3.638
	CNS0095596	Whole white alabastrum(diploid) 3	3.403
	CNS0095597	Whole white alabastrum(diploid) 4	4.511
	CNS0095598	Silvery flower (diploied) 1	1.814
	CNS0095599	Silvery flower (diploied) 2	0.818
	CNS0095600	Silvery flower (diploied) 3	0.054
	CNS0095601	Golden flower (diploid) 1	0.233
	CNS0095602	Golden flower (diploid) 2	0.039
	CNS0095603	Golden flower (diploid) 3	0.618
	CNS0095604	Slightly white alabastrum(tetraploid) 1	8.246
	CNS0095605	Slightly white alabastrum(tetraploid) 2	9.473
	CNS0095606	Slightly white alabastrum(tetraploid) 3	10.916
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.101
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.611
	CNS0095609	Whole white alabastrum(tetraploid) 3	13.477
	CNS0095610	Silvery flower (tetraploid) 1	5.687
	CNS0095611	Silvery flower (tetraploid) 2	5.116
	CNS0095612	Silvery flower (tetraploid) 3	6.238
	CNS0095613	Golden flower (tetraploid) 1	3.279
	CNS0095614	Golden flower (tetraploid) 2	2.156
	CNS0095615	Golden flower (tetraploid) 3	1.764
CRA001975	CRR073297	Stem 1	6.405
	CRR073298	Stem 2	11.974
	CRR073299	Stem 3	4.448
	CRR073300	Leaf 1	3.971
	CRR073301	Leaf 2	4.789
	CRR073302	Leaf 3	2.890
	CRR073303	Juvenile bud 1	0.959
	CRR073304	Juvenile bud 2	0.365
	CRR073305	Juvenile bud 3	0.540
	CRR073306	Third green 1	0.279
	CRR073307	Third green 2	0.428
	CRR073308	Third green 3	0.355
	CRR073309	Second white 1	0.010
	CRR073310	Second white 2	0.148
	CRR073311	Second white 3	0.054
	CRR073312	Silver flowering 1	0.309
	CRR073313	Silver flowering 2	0.301
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.488
	CRR073316	Gold flowering 2	0.985
	CRR073317	Gold flowering 3	0.336
	CRR073318	Tawny withering 1	0.933
	CRR073319	Tawny withering 2	1.777
	CRR073320	Tawny withering 3	0.488