Gene detail

Detail information of GWHGAAZE033509

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_006371546.1	1.6169E-117	hypothetical protein POPTR_0019s13040g [Populus trichocarpa]
COG	YP_001013494.1	1E-14	50S ribosomal protein L18P
Swissprot	tr\|Q6UNT2\|RL5_CUCSA	5E-109	60S ribosomal protein L5
trEMBL	tr\|A9PFA8\|A9PFA8_POPTR	6E-118	Uncharacterized protein {ECO:0000313\|EMBL:ERP49343.1}
TAIR10	AT5G39740.2	2E-76	ribosomal protein L5 B

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	1294797	1297208	-
GWHAAZE00000104	mRNA	1294797	1297208	-
GWHAAZE00000104	exon	1297113	1297208	-
GWHAAZE00000104	exon	1296906	1297022	-
GWHAAZE00000104	exon	1295406	1295540	-
GWHAAZE00000104	exon	1295018	1295241	-
GWHAAZE00000104	exon	1294797	1294914	-
GWHAAZE00000104	CDS	1297113	1297208	-
GWHAAZE00000104	CDS	1296906	1297022	-
GWHAAZE00000104	CDS	1295406	1295540	-
GWHAAZE00000104	CDS	1295018	1295241	-
GWHAAZE00000104	CDS	1294797	1294914	-

Transcript Sequence
>GWHTAAZE033548 ATGATTATTGAACCAGCTTACTGTACTGGACTTCTATTGGCCCGTCGTGTCTTGAAAATGCATGAGATGGATGACGAATATCAAGGCAATGTGGAGGCAACTGGAGAGGATTTCTCAGTTGAACCAGCAGAGAGCAGAAGACCATTCCGCGCACTCCTTGACGTTGGCCTTATTAGAACAACTACTGGGAACCATGTTTTTGGTGCTCTCAAGGGAGCTTTGGATGGTGGTTTGGATATTCCTCACAGCGACAAGAGATTTGCTGGCTTTTCGAAGGACTCCAAGAAGCTTGATGCCGAGGTTCACCGCAAATATGTTTATGGCGGCCATGTTGCCGCGTATATGAAGACTTTGATGGAAGATGAGCCAGAGAAGTACCAAAGTCACTTCTCTTTGTACATCAAGAAAGGAATTCAACCAGATGGTGTGGTGGCAATGTACAAGAAAGTTCATGCCGCCATTCATGCAAATCCTGCTGCTAAAATGTCTGAGAAAAAGCCACCTACGAAGCACAAGAGGTATGGAAACTTTTTTACATTTTCAATTTCAACATTCCTTGATATTATTCTTTGGTACAACTTGAAGAAGCTCACTTACGAGGAAAGGAAGGCCAAGTTAATTGAGCGCTTGAACGCTCTCAATGCCGCTGGAAGAGTTGATGACGATGAAGATGATGAAGACGACGATTGA

Network for GWHGAAZE033509

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040	GO:0008097 5S rRNA binding GOslim:molecular_function map03040 Spliceosome GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity GOslim:molecular_function

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF17144.5	Ribosomal_L5e	6	83	3.20E-29
PF14204.7	Ribosomal_L18_c	99	206	2.50E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02932	RP-L5e, RPL5	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0003735	molecular_function	structural constituent of ribosome
GO:0008097	molecular_function	5S rRNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	40.232
	SRR3591706	second leaf	67.284
	SRR3591707	mature leaf	38.935
	SRR3591708	Shoot apex	67.788
	SRR3591709	Stem	30.585
	SRR3591710	White floral bud	78.329
	SRR3591711	White flower	39.748
	SRR3591712	Green floral bud	135.346
	SRR3591713	Yellow flower	28.054
SRP173429	SRR8316895	Juvenile bud stage	84.689
	SRR8316896	Juvenile bud stage	150.735
	SRR8316897	Juvenile bud stage	158.532
	SRR8316894	Third green stage	58.179
	SRR8316900	Third green stage	116.953
	SRR8316901	Third green stage	132.893
	SRR8316898	Complete white stage	9.875
	SRR8316899	Complete white stage	72.024
	SRR8316903	Complete white stage	28.087
	SRR8316902	Silver flowering stage	10.010
	SRR8316904	Silver flowering stage	12.931
	SRR8316905	Silver flowering stage	5.239
	SRR8316906	Gold flowering stage	11.930
	SRR8316907	Gold flowering stage	14.050
	SRR8316908	Gold flowering stage	24.588
SRP132670	SRR6706286	Control	99.284
	SRR6706287	Light intensity 50%	118.721
	SRR6706288	Light intensity 20%	120.585
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	121.592
	CNS0095593	Slightly white alabastrum(diploid) 2	159.878
	CNS0095594	Slightly white alabastrum(diploid) 3	134.435
	CNS0095595	Whole white alabastrum(diploid) 2	113.240
	CNS0095596	Whole white alabastrum(diploid) 3	79.972
	CNS0095597	Whole white alabastrum(diploid) 4	104.239
	CNS0095598	Silvery flower (diploied) 1	57.322
	CNS0095599	Silvery flower (diploied) 2	84.151
	CNS0095600	Silvery flower (diploied) 3	11.023
	CNS0095601	Golden flower (diploid) 1	45.199
	CNS0095602	Golden flower (diploid) 2	21.651
	CNS0095603	Golden flower (diploid) 3	19.403
	CNS0095604	Slightly white alabastrum(tetraploid) 1	115.223
	CNS0095605	Slightly white alabastrum(tetraploid) 2	101.800
	CNS0095606	Slightly white alabastrum(tetraploid) 3	128.466
	CNS0095607	Whole white alabastrum(tetraploid) 1	73.286
	CNS0095608	Whole white alabastrum(tetraploid) 2	57.220
	CNS0095609	Whole white alabastrum(tetraploid) 3	87.083
	CNS0095610	Silvery flower (tetraploid) 1	19.009
	CNS0095611	Silvery flower (tetraploid) 2	12.327
	CNS0095612	Silvery flower (tetraploid) 3	14.457
	CNS0095613	Golden flower (tetraploid) 1	10.161
	CNS0095614	Golden flower (tetraploid) 2	12.479
	CNS0095615	Golden flower (tetraploid) 3	5.509
CRA001975	CRR073297	Stem 1	267.280
	CRR073298	Stem 2	222.547
	CRR073299	Stem 3	47.640
	CRR073300	Leaf 1	336.429
	CRR073301	Leaf 2	328.533
	CRR073302	Leaf 3	64.900
	CRR073303	Juvenile bud 1	56.559
	CRR073304	Juvenile bud 2	7.485
	CRR073305	Juvenile bud 3	29.983
	CRR073306	Third green 1	1.003
	CRR073307	Third green 2	0.662
	CRR073308	Third green 3	2.101
	CRR073309	Second white 1	0.629
	CRR073310	Second white 2	2.004
	CRR073311	Second white 3	0.811
	CRR073312	Silver flowering 1	1.787
	CRR073313	Silver flowering 2	1.395
	CRR073314	Silver flowering 3	0.556
	CRR073315	Gold flowering 1	16.925
	CRR073316	Gold flowering 2	36.913
	CRR073317	Gold flowering 3	3.281
	CRR073318	Tawny withering 1	36.264
	CRR073319	Tawny withering 2	86.156
	CRR073320	Tawny withering 3	32.014