Gene detail

Detail information of GWHGAAZE033503

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003525000.1	0	PREDICTED: serine/threonine-protein kinase CTR1-like isoform X1 [Glycine max]
COG	YP_003951720.1	1E-25	protein kinase
Swissprot	tr\|Q05609\|CTR1_ARATH	8E-41	Serine/threonine-protein kinase CTR1
trEMBL	tr\|K7KQN9\|K7KQN9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G30120.2}
TAIR10	AT2G43850.1	0	Integrin-linked protein kinase family

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	1188110	1197009	+
GWHAAZE00000104	mRNA	1188110	1197009	+
GWHAAZE00000104	exon	1188110	1188463	+
GWHAAZE00000104	exon	1189835	1189909	+
GWHAAZE00000104	exon	1189994	1190098	+
GWHAAZE00000104	exon	1191822	1191907	+
GWHAAZE00000104	exon	1192257	1192377	+
GWHAAZE00000104	exon	1193204	1193304	+
GWHAAZE00000104	exon	1193506	1193568	+
GWHAAZE00000104	exon	1193670	1193788	+
GWHAAZE00000104	exon	1195746	1195831	+
GWHAAZE00000104	exon	1196294	1196418	+
GWHAAZE00000104	exon	1196820	1197009	+
GWHAAZE00000104	CDS	1188110	1188463	+
GWHAAZE00000104	CDS	1189835	1189909	+
GWHAAZE00000104	CDS	1189994	1190098	+
GWHAAZE00000104	CDS	1191822	1191907	+
GWHAAZE00000104	CDS	1192257	1192377	+
GWHAAZE00000104	CDS	1193204	1193304	+
GWHAAZE00000104	CDS	1193506	1193568	+
GWHAAZE00000104	CDS	1193670	1193788	+
GWHAAZE00000104	CDS	1195746	1195831	+
GWHAAZE00000104	CDS	1196294	1196418	+
GWHAAZE00000104	CDS	1196820	1197009	+

Transcript Sequence
>GWHTAAZE033542 ATGAGTGGGAGATTCAGCTTCAAGCGCCAGAACTCTATGGACCCACGGCGCAATAGCCGGCGTTTCAGCTTCGGTCGCCAGTCTTCCCTTGATCCGATGCGACGGAGCGGGGCCAAGGATGACCTCACAGTGCCCGAGAATCTTGACTCTACGATGCAATTGCTGTTCCTAGCTTGCCAAGGGGATGTTGATGGATTGAATGATTTGCTGAATGATGGTGTTGATGTTAATAGCATTGATCTCGATGGGCGCACTGCTTTGCATATTGCTGCTTGTGAAGGGCGAGTTGAAGTTGTCAAGCTCTTGTTGAGTCACAAGGCTAATATTGATGCTCGTGATCGTTGGGGCAGTACGGCAGCTGCTGATGCTAAGTATTATGGAAATACAGAGGTTTACAATATTTTGAAGGCACGTGGAGCCAAAGCTCCGAAAACCAGAAAGACACCAATGACGGTTGAAAATCCTCGGGAAATTCCAGAGTATGAGCTCAATCCGATGGAGCTTCAAGTTCGCAGATGTGATGGCATCACGAAGGGAACATATCAAGTTGCTAAATGGAATGGCACAAAAGTTTCTGTAAAGATACTTGACCAGGACAGTTACTCAGACCCTGAAAGCATAAACGCTTTCAAGCATGAGTTAACTTTGTTAGAAAAGGTCCGGCATCCAAATGTGGTTCAGTTTGTTGGAGCTGTCACGCAAAATATACCTATGATGATCGTTTCCGAGTATCATTCAAGGGGTGACCTAAAAACTTATCTTGAAAAGAAAGGACGTCTATCTCCATCTAGAGCTCTAAGATTTGCTCTTGATATTGCTAGGCAAGTGCAACTTCTCTTAACGGGCATGAACTATCTTCATGAATGTAAACCAGACCCAGTTATCCATTGTGATTTAAGGCCCAAAAATATTTTGCTGGACTGTGGAGGCCAGTTGAAGGTTGCAGGATTTGGATTAGTTAGGTTATCAAAAATTTCGTCTGACAAAGCAAAACTAATGCGCACCGAGGACATTGATCGGACAAGTTTATATGTGGCACCTGAGCTCTATAAAGATGAAATGTTTGACAGACGTGTGGATGTTTACTCTTTTGGTCTTATCCTTTATGAGATGACGGAGGGAGTGCAGCCTTTTCACCCCAAGTCTGCAGAAGATGCTGCTAGATTCATGTGTTTAAAAGGAAACAGACCTGCATTCAAGCAAAAAACTAGAAGTTATCTTCCAGAGCTAAAAGAGTTGATTGAGGAATGTTGGGACCCAGATTACTTTGGAAGGCCAAACTTTTCCCAGATTATTGTACGGTTGGACAAAATTGTTATAAACTACTCTAAACATGGATGGTGGAAAGACGCCTTCAAGCTACCTTGGTACCTGTTTCTTTTCTTTGCTGAAAATAATGTTCGCTTTTCTACTGAGCTTTGTTAG

Network for GWHGAAZE033503

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12796.8	Ank_2	55	141	4.30E-10
PF07714.18	PK_Tyr_Ser-Thr	176	434	4.80E-47

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	TKL-Pl-5

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.419
	SRR3591706	second leaf	0.232
	SRR3591707	mature leaf	0.562
	SRR3591708	Shoot apex	0.324
	SRR3591709	Stem	1.177
	SRR3591710	White floral bud	117.467
	SRR3591711	White flower	4.427
	SRR3591712	Green floral bud	72.038
	SRR3591713	Yellow flower	2.583
SRP173429	SRR8316895	Juvenile bud stage	0.481
	SRR8316896	Juvenile bud stage	2.982
	SRR8316897	Juvenile bud stage	1.322
	SRR8316894	Third green stage	2.885
	SRR8316900	Third green stage	29.630
	SRR8316901	Third green stage	21.554
	SRR8316898	Complete white stage	0.069
	SRR8316899	Complete white stage	0.714
	SRR8316903	Complete white stage	0.250
	SRR8316902	Silver flowering stage	0.898
	SRR8316904	Silver flowering stage	2.407
	SRR8316905	Silver flowering stage	0.932
	SRR8316906	Gold flowering stage	0.321
	SRR8316907	Gold flowering stage	0.285
	SRR8316908	Gold flowering stage	0.277
SRP132670	SRR6706286	Control	18.424
	SRR6706287	Light intensity 50%	20.730
	SRR6706288	Light intensity 20%	19.213
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	16.944
	CNS0095593	Slightly white alabastrum(diploid) 2	9.727
	CNS0095594	Slightly white alabastrum(diploid) 3	12.432
	CNS0095595	Whole white alabastrum(diploid) 2	81.967
	CNS0095596	Whole white alabastrum(diploid) 3	83.671
	CNS0095597	Whole white alabastrum(diploid) 4	123.133
	CNS0095598	Silvery flower (diploied) 1	3.407
	CNS0095599	Silvery flower (diploied) 2	13.987
	CNS0095600	Silvery flower (diploied) 3	3.556
	CNS0095601	Golden flower (diploid) 1	4.133
	CNS0095602	Golden flower (diploid) 2	2.979
	CNS0095603	Golden flower (diploid) 3	2.589
	CNS0095604	Slightly white alabastrum(tetraploid) 1	37.789
	CNS0095605	Slightly white alabastrum(tetraploid) 2	41.114
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.356
	CNS0095607	Whole white alabastrum(tetraploid) 1	116.231
	CNS0095608	Whole white alabastrum(tetraploid) 2	147.106
	CNS0095609	Whole white alabastrum(tetraploid) 3	51.646
	CNS0095610	Silvery flower (tetraploid) 1	3.000
	CNS0095611	Silvery flower (tetraploid) 2	10.368
	CNS0095612	Silvery flower (tetraploid) 3	22.708
	CNS0095613	Golden flower (tetraploid) 1	3.681
	CNS0095614	Golden flower (tetraploid) 2	1.025
	CNS0095615	Golden flower (tetraploid) 3	12.650
CRA001975	CRR073297	Stem 1	3.442
	CRR073298	Stem 2	2.658
	CRR073299	Stem 3	1.496
	CRR073300	Leaf 1	31.831
	CRR073301	Leaf 2	16.404
	CRR073302	Leaf 3	6.031
	CRR073303	Juvenile bud 1	32.914
	CRR073304	Juvenile bud 2	19.386
	CRR073305	Juvenile bud 3	3.468
	CRR073306	Third green 1	10.161
	CRR073307	Third green 2	12.807
	CRR073308	Third green 3	11.488
	CRR073309	Second white 1	0.683
	CRR073310	Second white 2	3.480
	CRR073311	Second white 3	3.414
	CRR073312	Silver flowering 1	13.259
	CRR073313	Silver flowering 2	14.619
	CRR073314	Silver flowering 3	6.659
	CRR073315	Gold flowering 1	10.583
	CRR073316	Gold flowering 2	4.850
	CRR073317	Gold flowering 3	2.568
	CRR073318	Tawny withering 1	16.250
	CRR073319	Tawny withering 2	15.285
	CRR073320	Tawny withering 3	16.288