Gene detail

Detail information of GWHGAAZE033486

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011085909.1	1.8141E-178	PREDICTED: cysteine-rich receptor-like protein kinase 2 [Sesamum indicum]
COG	YP_004180201.1	0.0000004	serine/threonine protein kinase
Swissprot	tr\|Q9CAL3\|CRK2_ARATH	7E-58	Cysteine-rich receptor-like protein kinase 2 (Precursor)
trEMBL	tr\|A0A022R1P2\|A0A022R1P2_ERYGU	5E-170	Uncharacterized protein {ECO:0000313\|EMBL:EYU34522.1}
TAIR10	AT5G40380.1	5E-42	cysteine-rich RLK (RECEPTOR-like protein kinase) 42

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	1001562	1014079	+
GWHAAZE00000104	mRNA	1001562	1014079	+
GWHAAZE00000104	exon	1001562	1001962	+
GWHAAZE00000104	exon	1008527	1008924	+
GWHAAZE00000104	exon	1010918	1011043	+
GWHAAZE00000104	exon	1011637	1011764	+
GWHAAZE00000104	exon	1012496	1012706	+
GWHAAZE00000104	exon	1012859	1012892	+
GWHAAZE00000104	exon	1013051	1013090	+
GWHAAZE00000104	exon	1013846	1014079	+
GWHAAZE00000104	CDS	1001562	1001962	+
GWHAAZE00000104	CDS	1008527	1008924	+
GWHAAZE00000104	CDS	1010918	1011043	+
GWHAAZE00000104	CDS	1011637	1011764	+
GWHAAZE00000104	CDS	1012496	1012706	+
GWHAAZE00000104	CDS	1012859	1012892	+
GWHAAZE00000104	CDS	1013051	1013090	+
GWHAAZE00000104	CDS	1013846	1014079	+

Transcript Sequence
>GWHTAAZE033525 ATGCTAACCACCACACCAGGGTGGTTCCCATGGCGGCATTGGTTACCGGTGGTGGCCCTTATCCTCCTCCTTGTATACTCTACAAAACCAGCAGCATCACAACCACAAACAAATTTGTTAAATATTGCGTGCAGTCAAGACAACTCTACGGGTTCGTCAATGTTTTTGAACAACCTTAATAGTACACTTTCGGACTTAAGGAGACAATTATCGAGTGGTAACACAAAGTTTGCCACAGCTGATCAGGCTAGGAACACAAATCCCGTCTATGGATTGGCTCAGTGCCGTGACTACCTCTCCACTGTTGATTGTTTGGCATGTTTTGATGCCTCGGTGAGGCAGAGTCGCGATTGCTCCGCCGATACTGGTGCCCGTGTGATCTATGATGGCTGCTTTTTAAGGTATGAGGATAAGGGATTCTTCGATGAAACATCAAACCCTGGAAATGTGTTATTATGCGGAAATCGAACAGCTTCTCAGGCGACCGCATTTGATGCTGTTGTACAAGGGTTGTTAACAGACCTCGTTGTTGCAACTCCTAGGATTAACGGTTATTTTGCTGCGTCTACTAGGGCGGTAGTTGGCTCGGATTTAACAGTTTATGCGGTGGCGCAGTGTGCCCAAACAGTTAGTAGTAGTGGGTGCTTAAATTGCTTGAGAGTGGAACGTCAAAATATTCAGAGTTGCCCTCCTTTGGCTGATGCAAGGGCCGCTGATGTTGGTTGTTTCTTGAGGTATTCTGATACCTCTTTTTTTCCCGCCAACCAAACAACTAATATCACTCCTTTCTTGGGTGGAGGAGGTTCATCAAACAAGAAGAAAGCCATAATTGGGGGTGTGGCTGGTGGTGGGGGGTTTCTTTTGCTCATACTTGCTTTCTTTTTGTGGTATACTCTATCAAAGAAGCCCAATGATGCTATAAGAGGAAATATATTGGGGGCAACAGAGCTACGAGGCCCACATAATTATAGTTACGGAGATTTGAAATCGGCTACCAAAAATTTTAGTAAAGAATACAAATTAGGAGAAGGTGGCTTTGGAGAAGTGTTCAAGGGAATACTAAAGAATGGGAATGTAGTGGCAGTGAAGAGAATAACAATGTCCTCAAGCAGAGCAAATACAGAATTTGAAAGTGAAGTTAGGCTAATAAGCAATGTTCATCATCGAAATCTCATCCGTCTATTAGGTTGTTGCAGCAAATCTTCAGAGCTTTTTCTTGTCCTAGAATACATGGCCAATGGTAGCCTTGATAAACTTTTGTTCGGTGAAAAAAAGGGGACTCTTAACTGGAAGCAAAGGGGATCAGAGCCACATCAGCAGCAAATTTGCAGGGACTTTGCATGGAAACTGTATGAGAATGACATGCATTTGAAGCTGGTAGATGAGACACTAGACCCAAATGAATACACACCAGAGGAGGCAAAAAAGATCATTGAAATTGCTCTAATGTGCACTCAATCACCTGTTTCTTTGAGGCCAAATATGTCTGATGTTGTTGCTTCTCTTTCTAGTGACCGGTTCTTTGATGGAAAACCGACCAACGACTCTTCTTTGGTTGACTTTGAAGTCTGA

Network for GWHGAAZE033486

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01657.18	Stress-antifung	44	137	7.80E-18
PF01657.18	Stress-antifung	153	248	4.20E-11
PF07714.18	PK_Tyr_Ser-Thr	338	432	1.60E-18

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_DLSV

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.495
	SRR3591706	second leaf	0.413
	SRR3591707	mature leaf	2.928
	SRR3591708	Shoot apex	0.061
	SRR3591709	Stem	1.371
	SRR3591710	White floral bud	0.304
	SRR3591711	White flower	0.635
	SRR3591712	Green floral bud	0.101
	SRR3591713	Yellow flower	2.067
SRP173429	SRR8316895	Juvenile bud stage	1.410
	SRR8316896	Juvenile bud stage	1.723
	SRR8316897	Juvenile bud stage	0.067
	SRR8316894	Third green stage	0.173
	SRR8316900	Third green stage	0.130
	SRR8316901	Third green stage	0.239
	SRR8316898	Complete white stage	0.554
	SRR8316899	Complete white stage	0.096
	SRR8316903	Complete white stage	0.566
	SRR8316902	Silver flowering stage	0.867
	SRR8316904	Silver flowering stage	1.351
	SRR8316905	Silver flowering stage	0.614
	SRR8316906	Gold flowering stage	7.894
	SRR8316907	Gold flowering stage	6.588
	SRR8316908	Gold flowering stage	15.179
SRP132670	SRR6706286	Control	0.239
	SRR6706287	Light intensity 50%	0.139
	SRR6706288	Light intensity 20%	0.203
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.607
	CNS0095593	Slightly white alabastrum(diploid) 2	0.237
	CNS0095594	Slightly white alabastrum(diploid) 3	1.070
	CNS0095595	Whole white alabastrum(diploid) 2	0.272
	CNS0095596	Whole white alabastrum(diploid) 3	0.613
	CNS0095597	Whole white alabastrum(diploid) 4	0.291
	CNS0095598	Silvery flower (diploied) 1	0.786
	CNS0095599	Silvery flower (diploied) 2	0.347
	CNS0095600	Silvery flower (diploied) 3	0.491
	CNS0095601	Golden flower (diploid) 1	0.756
	CNS0095602	Golden flower (diploid) 2	4.268
	CNS0095603	Golden flower (diploid) 3	5.230
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.814
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.148
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.022
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.413
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.707
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.382
	CNS0095610	Silvery flower (tetraploid) 1	1.371
	CNS0095611	Silvery flower (tetraploid) 2	0.782
	CNS0095612	Silvery flower (tetraploid) 3	0.509
	CNS0095613	Golden flower (tetraploid) 1	2.865
	CNS0095614	Golden flower (tetraploid) 2	13.235
	CNS0095615	Golden flower (tetraploid) 3	5.033
CRA001975	CRR073297	Stem 1	0.821
	CRR073298	Stem 2	0.397
	CRR073299	Stem 3	0.564
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.014
	CRR073302	Leaf 3	0.064
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.641
	CRR073305	Juvenile bud 3	0.050
	CRR073306	Third green 1	0.503
	CRR073307	Third green 2	0.201
	CRR073308	Third green 3	0.499
	CRR073309	Second white 1	0.253
	CRR073310	Second white 2	0.086
	CRR073311	Second white 3	0.865
	CRR073312	Silver flowering 1	0.882
	CRR073313	Silver flowering 2	1.385
	CRR073314	Silver flowering 3	1.248
	CRR073315	Gold flowering 1	0.022
	CRR073316	Gold flowering 2	0.041
	CRR073317	Gold flowering 3	0.055
	CRR073318	Tawny withering 1	1.210
	CRR073319	Tawny withering 2	2.750
	CRR073320	Tawny withering 3	0.251