Gene detail

Detail information of GWHGAAZE033477

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHC69830.1	0	abscission polygalacturonase [Nicotiana tabacum]
COG	YP_003391696.1	6E-29	glycoside hydrolase family 28
Swissprot	tr\|P48979\|PGLR_PRUPE	0	Polygalacturonase (Precursor)
trEMBL	tr\|V9TI04\|V9TI04_TOBAC	0	Abscission polygalacturonase {ECO:0000313\|EMBL:AHC69830.1}
TAIR10	AT3G59850.1	2E-136	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	589783	591768	-
GWHAAZE00000104	mRNA	589783	591768	-
GWHAAZE00000104	exon	591397	591768	-
GWHAAZE00000104	exon	590591	590880	-
GWHAAZE00000104	exon	590174	590402	-
GWHAAZE00000104	exon	589783	590001	-
GWHAAZE00000104	CDS	591397	591768	-
GWHAAZE00000104	CDS	590591	590880	-
GWHAAZE00000104	CDS	590174	590402	-
GWHAAZE00000104	CDS	589783	590001	-

Transcript Sequence
>GWHTAAZE033516 TCAATTACTTACAATGTGGCGAGTTTAGGAGCCAAAGCCGACGGAAAGTTGGACTCGAGCAAGGCCTTCCTAAGTGCATGGGCTGCAGCTTGCGCCTCGGCTGATCCGGCCACCATCTACGTGCCAAATGGAAGGTTCTTGCTCGGTAGCATTACATTTGCTGGTCAAACGTGCAAAAATACTCGTATTACATTCCGTATTGATGGGACTCTAGTTGCCCCTTCGAATTACAATGTTATTGGAAACTCTGGTAACTGGATCACGTTCCAAAGAGTCACCGGAGTTTCCGTTCTTGGTGGAACCCTAGACGGTCAAGGGACTAACCTTTGGTCTTGTAAAAACTCTGGCAAGAATTGCCCTAATGGAGCAACGTCACTAGGATTCTACAATTCGAACAACATTGTTGTCGATGGACTAACTTCGTTAAACAGTCAAATGTTTCACATTATCATCTACGCTTGCCGCAACGCCAAGCTACAAGGAACGAAGATCATGGCAGCCGGTAATAGCCCAAACACCGACGGGATTCACGTACAATTATCCACCGGTGTCACCATCTTGAACTCTCGCATTTCTACTGGTGACGATTGCATCTCAATCGGCCCCGGGAACTCTAATTTGTGGATTGAGAACGTTGCTTGTGGGCCAGGTCATGGGATAAGCATTGGGAGTCTAGGATGGGACTTACAAGAACCTGGCGTACAAAATGTGACCGTTAAAACCGTTACCTTTAAGGGTACACAAAACGGAGTGAGGATAAAGTCCTGGGCTAGGGCTAGCAATGGCTTCGTTAAGGGTGTTCTTTTCCAACACCTTGTGATGGTCAATGTCCAGAATCCCGTCATAATCGATCAAAATTACTGCCCCAATAATAAAAACTGCCCCGGCCAGATTTCGGGTGTAAAAATTAGCGACGTAATGTATCAAGACATTCACGGAACATCGGCAACCGCGGTGGCCGTGAATTTTGATTGTAGCAAGAAGTATCCATGCAGTAACATAAAATTGGTGGATGTGAACCTCAGCTATAAGGATCAAACAGCACAAGCATCTTGCTCTAATGTTGGAGGAACTTCTTCTGGTGTTGTTAATCCTTCTAGCTGCCTGTAA

Network for GWHGAAZE033477

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	31	356	1.20E-84

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.037
	SRR3591710	White floral bud	90.671
	SRR3591711	White flower	1.479
	SRR3591712	Green floral bud	0.576
	SRR3591713	Yellow flower	58.172
SRP173429	SRR8316895	Juvenile bud stage	0.020
	SRR8316896	Juvenile bud stage	0.025
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.015
	SRR8316900	Third green stage	0.348
	SRR8316901	Third green stage	0.359
	SRR8316898	Complete white stage	0.396
	SRR8316899	Complete white stage	0.023
	SRR8316903	Complete white stage	2.704
	SRR8316902	Silver flowering stage	0.033
	SRR8316904	Silver flowering stage	0.630
	SRR8316905	Silver flowering stage	0.397
	SRR8316906	Gold flowering stage	4.118
	SRR8316907	Gold flowering stage	0.365
	SRR8316908	Gold flowering stage	2.979
SRP132670	SRR6706286	Control	3.072
	SRR6706287	Light intensity 50%	1.148
	SRR6706288	Light intensity 20%	0.400
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.330
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.269
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.061
	CNS0095597	Whole white alabastrum(diploid) 4	0.126
	CNS0095598	Silvery flower (diploied) 1	1.802
	CNS0095599	Silvery flower (diploied) 2	1.262
	CNS0095600	Silvery flower (diploied) 3	4.995
	CNS0095601	Golden flower (diploid) 1	3.740
	CNS0095602	Golden flower (diploid) 2	39.507
	CNS0095603	Golden flower (diploid) 3	38.036
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.046
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.089
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.057
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.063
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.648
	CNS0095610	Silvery flower (tetraploid) 1	1.417
	CNS0095611	Silvery flower (tetraploid) 2	1.320
	CNS0095612	Silvery flower (tetraploid) 3	0.555
	CNS0095613	Golden flower (tetraploid) 1	10.543
	CNS0095614	Golden flower (tetraploid) 2	14.439
	CNS0095615	Golden flower (tetraploid) 3	181.940
CRA001975	CRR073297	Stem 1	0.112
	CRR073298	Stem 2	0.155
	CRR073299	Stem 3	0.846
	CRR073300	Leaf 1	0.054
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.040
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.940
	CRR073308	Third green 3	0.602
	CRR073309	Second white 1	0.163
	CRR073310	Second white 2	0.210
	CRR073311	Second white 3	1.634
	CRR073312	Silver flowering 1	26.469
	CRR073313	Silver flowering 2	33.465
	CRR073314	Silver flowering 3	58.163
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000