Gene detail

Detail information of GWHGAAZE033475

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHC69830.1	0	abscission polygalacturonase [Nicotiana tabacum]
COG	YP_003391696.1	1E-28	glycoside hydrolase family 28
Swissprot	tr\|P48979\|PGLR_PRUPE	0	Polygalacturonase (Precursor)
trEMBL	tr\|V9TI04\|V9TI04_TOBAC	0	Abscission polygalacturonase {ECO:0000313\|EMBL:AHC69830.1}
TAIR10	AT3G59850.1	1E-143	Pectin lyase-like superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	477291	486258	-
GWHAAZE00000104	mRNA	477291	486258	-
GWHAAZE00000104	exon	486246	486258	-
GWHAAZE00000104	exon	478924	479297	-
GWHAAZE00000104	exon	478096	478385	-
GWHAAZE00000104	exon	477681	477909	-
GWHAAZE00000104	exon	477291	477509	-
GWHAAZE00000104	CDS	486246	486258	-
GWHAAZE00000104	CDS	478924	479297	-
GWHAAZE00000104	CDS	478096	478385	-
GWHAAZE00000104	CDS	477681	477909	-
GWHAAZE00000104	CDS	477291	477509	-

Transcript Sequence
>GWHTAAZE033514 ATGGATCTTATTGCTTCAATTACTTACAATGTGGCCAGTTTAGGAGCCAAAGCCGACGGAAAGTCGGACTCGAGCAAGGCCTTCCTAAGTGCATGGGCTGCAGCTTGTGGCTCGGCTAATCCGGCCACCATCTACGTGCCAAATGGAAGGTTCTTGCTCAGTAGCATTACATTTGCCGGTCAAACGTGCAAAAATACTCATATTATATTCCGCATTGATGGGATCCTAGTTGCCCCTTCGAATTACAATGTTATTGGAAATTCTGGTAACTGGATCACCTTCCAAAGAGTCACCGGAGTTTCCGTTCTTGGTGGAACCCTAGACGGTCAAGGGATTGACCTTTGGTCTTGTAAAAACTCCGGCAAGAATTGCCCTAATGGAGCAACGTCACTAGGATTCTACAATTCGAACAACATTGTTGTCGATGGACTAACTTCGTTAAACAGTCAAATGTTTCACATTATCATCTATGCTTGTCGCAACGCCAAGCTACAAGGAACTAAAATCATGGCAGCCGGTAACAGTCCAAATACTGACGGGATTCACGTACAATTATCCACCGGTGTCACCATCTTGAACTCTCGCATTTCTACTGGTGATGATTGCATCTCAATCGGCCCCGGGAACTCTAATTTGTGGATTGAGAATATTGCTTGTGGGCCTGGTCATGGGATAAGCATTGGGAGTCTAGGATGGGACTTACAAGAACCTGGCGTACAAAATGTGACTGTTAAAACCGTTACCTTTAAGGGTACACAAAACGGAGTGCGGATAAAGTCCTGGGCTAGGGCTAGCAATGGCTTCGTTAAGAGTGTTCTTTTCCAACACCTTGTGATGGTCGATGTCCAGAATCCTGTCATAATTGATCAAAATTACTGCCCTGATAATAAAAACTGCCCCGGCCAGGTTTCAGGTGTAAAAATTAGCGACGTAATGTATCAAGACATTCATGGAACATCGGCAACTGCAGTGGCTGTGAATTTTGATTGTAGCAAGACGTATCCATGCAGTAACATAAATTTGGTGGATGTGAACCTCAGCTATAAGGATCAACCAGCACAAGCATCTTGCTCTAATGTTGGAGGAACTTCTTCTGGTGTTGTTAATCCTTCTAGCTGCTTGTAA

Network for GWHGAAZE033475

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00295.18	Glyco_hydro_28	36	361	1.90E-82

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01184	E3.2.1.15	Metabolic pathways	map01100
K01184	E3.2.1.15	Pentose and glucuronate interconversions	map00040

Gene Ontology

GO term	Ontology	Name
GO:0005975	biological_process	carbohydrate metabolic process
GO:0004650	molecular_function	polygalacturonase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.148
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	113.392
	SRR3591711	White flower	2.166
	SRR3591712	Green floral bud	0.212
	SRR3591713	Yellow flower	284.377
SRP173429	SRR8316895	Juvenile bud stage	0.039
	SRR8316896	Juvenile bud stage	0.004
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.022
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.004
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.046
	SRR8316903	Complete white stage	0.091
	SRR8316902	Silver flowering stage	0.000
	SRR8316904	Silver flowering stage	0.194
	SRR8316905	Silver flowering stage	0.045
	SRR8316906	Gold flowering stage	0.606
	SRR8316907	Gold flowering stage	0.027
	SRR8316908	Gold flowering stage	0.688
SRP132670	SRR6706286	Control	0.090
	SRR6706287	Light intensity 50%	0.094
	SRR6706288	Light intensity 20%	0.012
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.014
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.459
	CNS0095600	Silvery flower (diploied) 3	1.098
	CNS0095601	Golden flower (diploid) 1	1.299
	CNS0095602	Golden flower (diploid) 2	13.065
	CNS0095603	Golden flower (diploid) 3	13.166
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.045
	CNS0095610	Silvery flower (tetraploid) 1	0.112
	CNS0095611	Silvery flower (tetraploid) 2	0.111
	CNS0095612	Silvery flower (tetraploid) 3	0.034
	CNS0095613	Golden flower (tetraploid) 1	0.442
	CNS0095614	Golden flower (tetraploid) 2	6.011
	CNS0095615	Golden flower (tetraploid) 3	6.874
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.060
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.014
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.037
	CRR073307	Third green 2	0.107
	CRR073308	Third green 3	0.003
	CRR073309	Second white 1	0.106
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.070
	CRR073312	Silver flowering 1	0.965
	CRR073313	Silver flowering 2	4.004
	CRR073314	Silver flowering 3	5.573
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000