Gene detail

Detail information of GWHGAAZE033469

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002280402.1	2.6385E-176	PREDICTED: 4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic [Vitis vinifera]
COG	YP_003251048.1	3E-98	dihydrodipicolinate reductase
Swissprot	tr\|Q8LB01\|DAPB2_ARATH	2E-165	4-hydroxy-tetrahydrodipicolinate reductase 2, chloroplastic (Precursor)
trEMBL	tr\|F6HB41\|F6HB41_VITVI	1E-176	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB49428.1}
TAIR10	AT3G59890.1	3E-131	Dihydrodipicolinate reductase, bacterial/plant

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000104	gene	279699	286562	+
GWHAAZE00000104	mRNA	279699	286562	+
GWHAAZE00000104	exon	279699	279959	+
GWHAAZE00000104	exon	280912	281149	+
GWHAAZE00000104	exon	282289	282422	+
GWHAAZE00000104	exon	282570	282644	+
GWHAAZE00000104	exon	284657	284758	+
GWHAAZE00000104	exon	285772	285881	+
GWHAAZE00000104	exon	285988	286075	+
GWHAAZE00000104	exon	286494	286562	+
GWHAAZE00000104	CDS	279699	279959	+
GWHAAZE00000104	CDS	280912	281149	+
GWHAAZE00000104	CDS	282289	282422	+
GWHAAZE00000104	CDS	282570	282644	+
GWHAAZE00000104	CDS	284657	284758	+
GWHAAZE00000104	CDS	285772	285881	+
GWHAAZE00000104	CDS	285988	286075	+
GWHAAZE00000104	CDS	286494	286562	+

Transcript Sequence
>GWHTAAZE033508 ATCACCAAGGTAATGGGTTTGGCTATTGAACTAGTCCCAGTAGTCAAATCTTTTGCTCCATTCTCTAAGTGTAGTAGTAGTAATAGTAGAGTACTACCGCACACCCTTGCTGCTGCTGCTGCTATTCAAAAGCAAAAAAGATCATATTCATTGGTCGTCTCTCTATCTTCTTCTGCATCAATGGAACCTATTCAATGCCTGGATGACAAGAACAACAAGACTCCTTCACTTACCTCCCAAAATCTTGCTGTCCCTATCATGGTGAATGGTTGCACAGGAAAAATGGGAAAGGCAGTAATAGAAGCAGCAATTTCTGCAGGACTACAACCAGTTCCTGTATCATTTGGGAGTTCAGAAGATTGTGGGAAAACTGTGGCAGTAGGGGGGACAAATATTAAGGTGCATGGTCCTTCTAACAGGCTGAAAACTCTAGCGTCTGTCTTTGATGAATATCCCAGTCTGATAGTGGTGGACTACACAGTGCCTACTGCAGTGAATGATAATGCTGAATTATATTGCAAAGTCGGAGTGCCATTTGTAATGGGAACCACGGGAGGAGACAGGTCACGACTATATAAGACTGTGGAAGACTCAAATGTGTATGCTGTGATCTCTCCACAAATGGGAAAGCAGGTTGTAGCATTTCTTGCAGCCATGGAGATTATGGCTGAGCAATCTCCTGGAGCCTTCTCCGGCTATAAACTGGAGGTGTTGGAGTCACATCAAGCTAGCAAGTTGGATACATCTGGAACTGCTAAAGCTGTCATCTCATGCTTTCAGAAACTTGGGGTCTCCTTTGATTTGAATCAGATTGAAAAAATAAGGGATCCCAAGCAACAAATTGAGATGGTGGGTGTCCCTGAGGAGTACCTATCTGGTCATGCTTTCCATTTGTATCGTCTCACATCTCCTGATGGAACAGTTTCCTTTGAATTTCAGCATAATGTTTGCGGTAGATCAATCTATGCAGAGGGTACAGTTGATGCTACAATTTTTCTCGCTAAGAAGGTTCAATTGAAGGCAGAGAAGAGGATCTACGATATGATTGATGTCTTGAGAGAGGGTAACATGAGATGA

Network for GWHGAAZE033469

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01113.21	DapB_N	85	208	2.00E-17
PF05173.15	DapB_C	212	352	1.90E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00215	dapB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of amino acids	map01230
		Lysine biosynthesis	map00300
		Monobactam biosynthesis	map00261

Gene Ontology

GO term	Ontology	Name
GO:0009089	biological_process	lysine biosynthetic process via diaminopimelate
GO:0055114	biological_process	oxidation-reduction process
GO:0008839	molecular_function	4-hydroxy-tetrahydrodipicolinate reductase
GO:0070402	molecular_function	NADPH binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	36.625
	SRR3591706	second leaf	16.457
	SRR3591707	mature leaf	7.649
	SRR3591708	Shoot apex	47.329
	SRR3591709	Stem	16.338
	SRR3591710	White floral bud	9.989
	SRR3591711	White flower	9.138
	SRR3591712	Green floral bud	29.317
	SRR3591713	Yellow flower	2.529
SRP173429	SRR8316895	Juvenile bud stage	19.794
	SRR8316896	Juvenile bud stage	23.605
	SRR8316897	Juvenile bud stage	16.827
	SRR8316894	Third green stage	10.873
	SRR8316900	Third green stage	30.312
	SRR8316901	Third green stage	24.882
	SRR8316898	Complete white stage	2.067
	SRR8316899	Complete white stage	16.949
	SRR8316903	Complete white stage	2.916
	SRR8316902	Silver flowering stage	1.543
	SRR8316904	Silver flowering stage	1.503
	SRR8316905	Silver flowering stage	0.429
	SRR8316906	Gold flowering stage	1.995
	SRR8316907	Gold flowering stage	2.492
	SRR8316908	Gold flowering stage	3.109
SRP132670	SRR6706286	Control	14.734
	SRR6706287	Light intensity 50%	14.567
	SRR6706288	Light intensity 20%	18.247
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.405
	CNS0095593	Slightly white alabastrum(diploid) 2	30.973
	CNS0095594	Slightly white alabastrum(diploid) 3	22.060
	CNS0095595	Whole white alabastrum(diploid) 2	23.936
	CNS0095596	Whole white alabastrum(diploid) 3	24.469
	CNS0095597	Whole white alabastrum(diploid) 4	16.667
	CNS0095598	Silvery flower (diploied) 1	19.723
	CNS0095599	Silvery flower (diploied) 2	14.245
	CNS0095600	Silvery flower (diploied) 3	5.810
	CNS0095601	Golden flower (diploid) 1	12.797
	CNS0095602	Golden flower (diploid) 2	6.849
	CNS0095603	Golden flower (diploid) 3	8.096
	CNS0095604	Slightly white alabastrum(tetraploid) 1	26.185
	CNS0095605	Slightly white alabastrum(tetraploid) 2	27.428
	CNS0095606	Slightly white alabastrum(tetraploid) 3	41.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.822
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.787
	CNS0095609	Whole white alabastrum(tetraploid) 3	30.719
	CNS0095610	Silvery flower (tetraploid) 1	4.878
	CNS0095611	Silvery flower (tetraploid) 2	4.318
	CNS0095612	Silvery flower (tetraploid) 3	3.369
	CNS0095613	Golden flower (tetraploid) 1	1.158
	CNS0095614	Golden flower (tetraploid) 2	2.116
	CNS0095615	Golden flower (tetraploid) 3	0.409
CRA001975	CRR073297	Stem 1	25.568
	CRR073298	Stem 2	18.515
	CRR073299	Stem 3	18.452
	CRR073300	Leaf 1	17.285
	CRR073301	Leaf 2	18.552
	CRR073302	Leaf 3	22.315
	CRR073303	Juvenile bud 1	16.387
	CRR073304	Juvenile bud 2	10.256
	CRR073305	Juvenile bud 3	16.227
	CRR073306	Third green 1	0.562
	CRR073307	Third green 2	0.610
	CRR073308	Third green 3	0.439
	CRR073309	Second white 1	1.922
	CRR073310	Second white 2	0.588
	CRR073311	Second white 3	0.600
	CRR073312	Silver flowering 1	0.119
	CRR073313	Silver flowering 2	0.517
	CRR073314	Silver flowering 3	0.988
	CRR073315	Gold flowering 1	5.128
	CRR073316	Gold flowering 2	9.572
	CRR073317	Gold flowering 3	4.434
	CRR073318	Tawny withering 1	14.814
	CRR073319	Tawny withering 2	14.797
	CRR073320	Tawny withering 3	17.202