Detail information of GWHGAAZE033455


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011094061.11.68436E-43PREDICTED: SART-1 family protein DOT2 [Sesamum indicum]
Swissprottr|Q9LFE0|DOT2_ARATH3E-40SART-1 family protein DOT2 {ECO:0000305}
trEMBLtr|A0A022QGS6|A0A022QGS6_ERYGU1E-43Uncharacterized protein {ECO:0000313|EMBL:EYU25740.1}
TAIR10AT5G16780.12E-35SART-1 family

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000100gene2879529746+
GWHAAZE00000100mRNA2879529746+
GWHAAZE00000100exon2879528887+
GWHAAZE00000100exon2948329746+
GWHAAZE00000100CDS2879528887+
GWHAAZE00000100CDS2948329746+
Transcript Sequence

Network for GWHGAAZE033455

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0094GO:0000398 mRNA splicing, via spliceosome GOslim:biological_process
map03040 Spliceosome
GO:0005634 nucleus GOslim:cellular_component


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03343.14SART-115652.00E-15
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K11984SART1, HAF, SNU66 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0000398biological_processmRNA splicing, via spliceosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.501
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.000
SRR3591709Stem0.000
SRR3591710White floral bud0.000
SRR3591711White flower0.000
SRR3591712Green floral bud0.322
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 0.830
SRR8316896Juvenile bud stage 1.715
SRR8316897Juvenile bud stage 0.659
SRR8316894Third green stage 0.332
SRR8316900Third green stage 1.026
SRR8316901Third green stage 1.368
SRR8316898Complete white stage 0.000
SRR8316899Complete white stage 0.000
SRR8316903Complete white stage 0.000
SRR8316902Silver flowering stage0.000
SRR8316904Silver flowering stage0.000
SRR8316905Silver flowering stage0.000
SRR8316906Gold flowering stage 0.086
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.000
SRP132670SRR6706286Control0.001
SRR6706287Light intensity 50%0.274
SRR6706288Light intensity 20%0.182
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.973
CNS0095593Slightly white alabastrum(diploid) 22.094
CNS0095594Slightly white alabastrum(diploid) 32.396
CNS0095595Whole white alabastrum(diploid) 22.652
CNS0095596Whole white alabastrum(diploid) 33.898
CNS0095597Whole white alabastrum(diploid) 41.822
CNS0095598Silvery flower (diploied) 11.632
CNS0095599Silvery flower (diploied) 20.000
CNS0095600Silvery flower (diploied) 30.000
CNS0095601Golden flower (diploid) 10.127
CNS0095602Golden flower (diploid) 20.000
CNS0095603Golden flower (diploid) 30.101
CNS0095604Slightly white alabastrum(tetraploid) 12.245
CNS0095605Slightly white alabastrum(tetraploid) 22.052
CNS0095606Slightly white alabastrum(tetraploid) 30.000
CNS0095607Whole white alabastrum(tetraploid) 12.346
CNS0095608Whole white alabastrum(tetraploid) 21.097
CNS0095609Whole white alabastrum(tetraploid) 30.561
CNS0095610Silvery flower (tetraploid) 10.079
CNS0095611Silvery flower (tetraploid) 20.054
CNS0095612Silvery flower (tetraploid) 30.047
CNS0095613Golden flower (tetraploid) 10.154
CNS0095614Golden flower (tetraploid) 20.221
CNS0095615Golden flower (tetraploid) 30.000
CRA001975CRR073297Stem 10.037
CRR073298Stem 20.271
CRR073299Stem 30.000
CRR073300Leaf 10.425
CRR073301Leaf 20.598
CRR073302Leaf 30.000
CRR073303Juvenile bud 10.000
CRR073304Juvenile bud 20.000
CRR073305Juvenile bud 30.000
CRR073306Third green 10.000
CRR073307Third green 20.000
CRR073308Third green 30.000
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.000
CRR073312Silver flowering 10.000
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.013
CRR073316Gold flowering 20.078
CRR073317Gold flowering 30.000
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.370
CRR073320Tawny withering 30.000