Gene detail

Detail information of GWHGAAZE033406

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009343156.1	6.20148E-81	PREDICTED: protein kinase APK1B, chloroplastic-like [Pyrus x bretschneideri]
COG	YP_001543477.1	0.0000003	serine/threonine kinase
Swissprot	tr\|Q9FE20\|PBS1_ARATH	1E-32	Serine/threonine-protein kinase PBS1
trEMBL	tr\|W9QW66\|W9QW66_9ROSA	5E-79	Serine/threonine-protein kinase BIK1 {ECO:0000313\|EMBL:EXB40298.1}
TAIR10	AT5G13160.1	3E-26	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000093	gene	518795	522824	+
GWHAAZE00000093	mRNA	518795	522824	+
GWHAAZE00000093	exon	518795	518852	+
GWHAAZE00000093	exon	519518	519684	+
GWHAAZE00000093	exon	519788	519941	+
GWHAAZE00000093	exon	520544	520671	+
GWHAAZE00000093	exon	521033	521156	+
GWHAAZE00000093	exon	522481	522824	+
GWHAAZE00000093	CDS	518795	518852	+
GWHAAZE00000093	CDS	519518	519684	+
GWHAAZE00000093	CDS	519788	519941	+
GWHAAZE00000093	CDS	520544	520671	+
GWHAAZE00000093	CDS	521033	521156	+
GWHAAZE00000093	CDS	522481	522824	+

Transcript Sequence
>GWHTAAZE033445 ATGCCGCTCGACATCTCAGATTCGCTGGCATTGGTGAAAAAACGTTGTTTAGAAGAAACACTTACTGACAATTTCAAGGAAGAAAACTTCATTGGATCAACAACCTATGGTAAGGTCTACCGAGGAAGGCTTAAGCTCGATTCAATTGGAGCCGAAACAAGAGATGTGACAGTAAAGATTTGGGATGATAAAGTAGATGTTATTGATGATGGTAAAGTGGTCGAGGAAGAAGTGAGGTTTCTATCTCATCCCGGTGTGAATCACCACCCTAACTTGGCAAAGTTGATAGGCTTTTCCAGCAATGGCTGTTGGGGACCTGTGAATGGTGTTGTTTATGATCTCAACCCATTAGATACTTTGTATAATCACACTTCAAAAGACAATTTCTCTTGGATCCAGAGGATTAAAGTAGCCCTTGAATTTGCGAAGCTCCTTGAATTTCTGCATGATGGGGAACCACCATATATGGTCTTCAATATTGATTCAACAAATATTATGCTTGATCAGGCCTGCAATCCAATATTGATTGACTTCGGGCTGCTCAGTGGTGGGATTATGGGTGACCTACGTTTTTCACAGCAGTTTGGACATATGTCAGTAGGCTACTGCGACCCATATTACGCTGAGAGAGGAATAAGGAGGATATGGAGCGATGTGTTTTCATATGGTTTGATTCTGCTGGGGCTGATAGCCAAGAGAGTTGACTTGAAGGAGGATCTGGCAACTCTCAACTATGAAACATTGGATGAGTGGGCCTACAAAGTGTACAAACATCAGTGCTTGCTTGTACACACTGACCTAAGGGACGACAAGGATTTCGACAAGTTTGATGGTATTGTGATGACCGAGCTGGCGATACGCTGTATACAAGAAGATAATGCAAAAGACCGCCCCACTATGAGTCAAGTTGTGAAGAGCCTCGAGAATTTACGTGCTTTTCAAGTTCTTAGTACGCGCACAGAGACAAGAGGATGA

Network for GWHGAAZE033406

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07714.18	PK_Tyr_Ser-Thr	28	307	2.80E-14

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_RLCK-VIIa-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	18.382
	SRR3591706	second leaf	9.845
	SRR3591707	mature leaf	11.114
	SRR3591708	Shoot apex	19.181
	SRR3591709	Stem	24.409
	SRR3591710	White floral bud	64.210
	SRR3591711	White flower	55.967
	SRR3591712	Green floral bud	64.734
	SRR3591713	Yellow flower	43.816
SRP173429	SRR8316895	Juvenile bud stage	12.175
	SRR8316896	Juvenile bud stage	16.887
	SRR8316897	Juvenile bud stage	9.091
	SRR8316894	Third green stage	7.845
	SRR8316900	Third green stage	19.513
	SRR8316901	Third green stage	20.993
	SRR8316898	Complete white stage	5.438
	SRR8316899	Complete white stage	19.163
	SRR8316903	Complete white stage	9.130
	SRR8316902	Silver flowering stage	4.653
	SRR8316904	Silver flowering stage	6.854
	SRR8316905	Silver flowering stage	2.942
	SRR8316906	Gold flowering stage	10.388
	SRR8316907	Gold flowering stage	10.704
	SRR8316908	Gold flowering stage	12.458
SRP132670	SRR6706286	Control	18.638
	SRR6706287	Light intensity 50%	21.231
	SRR6706288	Light intensity 20%	21.553
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	15.185
	CNS0095593	Slightly white alabastrum(diploid) 2	18.681
	CNS0095594	Slightly white alabastrum(diploid) 3	17.696
	CNS0095595	Whole white alabastrum(diploid) 2	20.494
	CNS0095596	Whole white alabastrum(diploid) 3	21.772
	CNS0095597	Whole white alabastrum(diploid) 4	18.478
	CNS0095598	Silvery flower (diploied) 1	9.618
	CNS0095599	Silvery flower (diploied) 2	7.571
	CNS0095600	Silvery flower (diploied) 3	8.349
	CNS0095601	Golden flower (diploid) 1	7.597
	CNS0095602	Golden flower (diploid) 2	7.602
	CNS0095603	Golden flower (diploid) 3	6.792
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.614
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.255
	CNS0095606	Slightly white alabastrum(tetraploid) 3	14.857
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.360
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.847
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.039
	CNS0095610	Silvery flower (tetraploid) 1	8.835
	CNS0095611	Silvery flower (tetraploid) 2	9.491
	CNS0095612	Silvery flower (tetraploid) 3	11.841
	CNS0095613	Golden flower (tetraploid) 1	9.138
	CNS0095614	Golden flower (tetraploid) 2	10.374
	CNS0095615	Golden flower (tetraploid) 3	10.549
CRA001975	CRR073297	Stem 1	20.479
	CRR073298	Stem 2	15.118
	CRR073299	Stem 3	15.170
	CRR073300	Leaf 1	21.158
	CRR073301	Leaf 2	20.320
	CRR073302	Leaf 3	15.428
	CRR073303	Juvenile bud 1	14.209
	CRR073304	Juvenile bud 2	10.850
	CRR073305	Juvenile bud 3	11.835
	CRR073306	Third green 1	2.828
	CRR073307	Third green 2	3.750
	CRR073308	Third green 3	2.601
	CRR073309	Second white 1	2.444
	CRR073310	Second white 2	4.655
	CRR073311	Second white 3	3.326
	CRR073312	Silver flowering 1	3.820
	CRR073313	Silver flowering 2	1.412
	CRR073314	Silver flowering 3	2.545
	CRR073315	Gold flowering 1	9.785
	CRR073316	Gold flowering 2	16.500
	CRR073317	Gold flowering 3	8.289
	CRR073318	Tawny withering 1	7.309
	CRR073319	Tawny withering 2	9.921
	CRR073320	Tawny withering 3	6.887