Gene detail

Detail information of GWHGAAZE033319

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP16651.1	0	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LU89\|2A5N_ARATH	0	Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform
trEMBL	tr\|A0A068V7K6\|A0A068V7K6_COFCA	0	Coffea canephora DH200=94 genomic scaffold, scaffold_135 {ECO:0000313\|EMBL:CDP16651.1}
TAIR10	AT3G26020.2	5E-165	Protein phosphatase 2A regulatory B subunit family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4661980	4663269	-
GWHAAZE00000094	mRNA	4661980	4663269	-
GWHAAZE00000094	exon	4661980	4663269	-
GWHAAZE00000094	CDS	4661980	4663269	-

Transcript Sequence
>GWHTAAZE033358 ATGATCAAACAGATACTTAATAGGCTCCCAAAGAAGCCATCTAAGTCAACAACAGAAAATCGCGATGGAGGAGCCTCAACCTTGCCTTCAAATGCTTCTACCAGTTCAAGAAGTAGTGATCTACTGAGTAATCGGTCTGGCAATTCGAATGCTGCGCCTCTTCCTCATGGTTCCAATTCTAATGCCAATGCAGGGGTAAATCATGGGAATAAGCTTCCCCAATCTTTAAACTCAAAGGTGAATGGGAATTCAACTATTTCTTCTTCTTACGAGGCTTTGCCTAGTTTCAGAGATGTTCCAAACTCCGAGAAGCAGAATTTGTTCCTTAAAAAGCTGAACATGTGTTGTGTTTTGTTCGACTTTACTGATCCAACAAAGAATTTGAAAGAGAAGGAGATCAAGCGACAGACTTTGGTTGAGCTCGTAGATTATGTTAGTTCTGCAAATGGAAAATTCACAGAAAATGTCATGCAAGAAATTGTGAGGATGGTGTCCATAAATTTATTTAGGGCCCTCACCGCTCAACCTCGTGAGAACAAAGCCTTAGAAGCTTTTGATTTGGAAGAAGAGGAGCCATTGATGGACCCCACATGGCCTCACTTACAAATTGTGTATGAATTCCTTCTTAGGTTTGTGGCATCGCCAGAGACAGATGCAAAGCTGGCTAAGCGCTACATTGATCACGCTTTTATAATACGGTTGTTAGATCTTTTTGATTCCGAGGATCCCAGAGAAAGGGAGTACTTGAAAACCGTTCTGCACCGGATATATGGAAAGTTTATGGTCCATCGCCCGTTCATTAGGAAAGGAATCAACAACATATTCTTCCGTTTTATTTTTGAAACCGAGAAGCATAATGGAATTGCTGAGCTCCTAGAGATTTTGGGGAGTATAATAAATGGGTTTGCTTTGCCGCTGAAAGAAGAGCACAAGCTCTTTCTAGTTCGAGCGTTGATACCACTTCACAAACCAAAATGCTTACCGATGTACCATCAGCAATTATCTTACTGCATCACACAATTTGTGGAGAAAGACTGCAAGCTTGCCGACACTGTTATAAGGGGTTTATTAAAGTATTGGCCAATCACAAATAGTTCAAAGGAGGTGATGTTTTTGGGTGAGCTGGAGGAAGTTTTAGAAGCAACTCAGGCTCCAGAGTTCCAACACTGTATGGTTCCGTTGTTTCGTCAGATTGGTTGTTGTTTGAGCAGTTCACACTTCCAGGTTAGTGGTTCTACTAGATTCATCATTGATCATTGCTTGCCACCACTTCTACTTTCTCATTTATAG

Network for GWHGAAZE033319

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01603.21	B56	93	416	1.20E-150

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K11584	PPP2R5	mRNA surveillance pathway	map03015
		Sphingolipid signaling pathway	map04071
		PI3K-Akt signaling pathway	map04151
		AMPK signaling pathway	map04152
		Meiosis - yeast	map04113
		Oocyte meiosis	map04114
		Adrenergic signaling in cardiomyocytes	map04261
		Dopaminergic synapse	map04728

Gene Ontology

GO term	Ontology	Name
GO:0007165	biological_process	signal transduction
GO:0000159	cellular_component	protein phosphatase type 2A complex
GO:0019888	molecular_function	protein phosphatase regulator activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	33.587
	SRR3591706	second leaf	8.979
	SRR3591707	mature leaf	14.310
	SRR3591708	Shoot apex	17.420
	SRR3591709	Stem	31.272
	SRR3591710	White floral bud	16.709
	SRR3591711	White flower	18.588
	SRR3591712	Green floral bud	19.766
	SRR3591713	Yellow flower	15.015
SRP173429	SRR8316895	Juvenile bud stage	15.110
	SRR8316896	Juvenile bud stage	19.826
	SRR8316897	Juvenile bud stage	9.967
	SRR8316894	Third green stage	7.271
	SRR8316900	Third green stage	17.744
	SRR8316901	Third green stage	18.231
	SRR8316898	Complete white stage	7.629
	SRR8316899	Complete white stage	24.917
	SRR8316903	Complete white stage	12.507
	SRR8316902	Silver flowering stage	8.664
	SRR8316904	Silver flowering stage	12.012
	SRR8316905	Silver flowering stage	4.988
	SRR8316906	Gold flowering stage	21.004
	SRR8316907	Gold flowering stage	16.709
	SRR8316908	Gold flowering stage	15.119
SRP132670	SRR6706286	Control	7.851
	SRR6706287	Light intensity 50%	9.958
	SRR6706288	Light intensity 20%	10.372
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.603
	CNS0095593	Slightly white alabastrum(diploid) 2	10.429
	CNS0095594	Slightly white alabastrum(diploid) 3	10.701
	CNS0095595	Whole white alabastrum(diploid) 2	14.069
	CNS0095596	Whole white alabastrum(diploid) 3	12.540
	CNS0095597	Whole white alabastrum(diploid) 4	15.098
	CNS0095598	Silvery flower (diploied) 1	13.084
	CNS0095599	Silvery flower (diploied) 2	12.356
	CNS0095600	Silvery flower (diploied) 3	23.102
	CNS0095601	Golden flower (diploid) 1	13.409
	CNS0095602	Golden flower (diploid) 2	22.217
	CNS0095603	Golden flower (diploid) 3	22.212
	CNS0095604	Slightly white alabastrum(tetraploid) 1	17.458
	CNS0095605	Slightly white alabastrum(tetraploid) 2	15.759
	CNS0095606	Slightly white alabastrum(tetraploid) 3	22.141
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.523
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.561
	CNS0095609	Whole white alabastrum(tetraploid) 3	19.159
	CNS0095610	Silvery flower (tetraploid) 1	19.385
	CNS0095611	Silvery flower (tetraploid) 2	17.888
	CNS0095612	Silvery flower (tetraploid) 3	18.216
	CNS0095613	Golden flower (tetraploid) 1	12.035
	CNS0095614	Golden flower (tetraploid) 2	17.735
	CNS0095615	Golden flower (tetraploid) 3	19.138
CRA001975	CRR073297	Stem 1	18.694
	CRR073298	Stem 2	16.548
	CRR073299	Stem 3	15.068
	CRR073300	Leaf 1	18.862
	CRR073301	Leaf 2	16.148
	CRR073302	Leaf 3	12.152
	CRR073303	Juvenile bud 1	12.445
	CRR073304	Juvenile bud 2	10.124
	CRR073305	Juvenile bud 3	12.101
	CRR073306	Third green 1	6.836
	CRR073307	Third green 2	7.441
	CRR073308	Third green 3	6.153
	CRR073309	Second white 1	8.148
	CRR073310	Second white 2	7.856
	CRR073311	Second white 3	7.779
	CRR073312	Silver flowering 1	6.366
	CRR073313	Silver flowering 2	4.192
	CRR073314	Silver flowering 3	4.424
	CRR073315	Gold flowering 1	9.018
	CRR073316	Gold flowering 2	17.271
	CRR073317	Gold flowering 3	5.913
	CRR073318	Tawny withering 1	17.875
	CRR073319	Tawny withering 2	13.184
	CRR073320	Tawny withering 3	19.982