Gene detail

Detail information of GWHGAAZE033311

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_002526934.1	conserved hypothetical protein [Ricinus communis]
trEMBL	tr\|B9SLR5\|B9SLR5_RICCO	Putative uncharacterized protein {ECO:0000313\|EMBL:EEF35421.1}
TAIR10	AT3G01720.1	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4591628	4596259	+
GWHAAZE00000094	mRNA	4591628	4596259	+
GWHAAZE00000094	exon	4591628	4591917	+
GWHAAZE00000094	exon	4592756	4592926	+
GWHAAZE00000094	exon	4593104	4593347	+
GWHAAZE00000094	exon	4593436	4593636	+
GWHAAZE00000094	exon	4593741	4594216	+
GWHAAZE00000094	exon	4594920	4595084	+
GWHAAZE00000094	exon	4595236	4595479	+
GWHAAZE00000094	exon	4595588	4596259	+
GWHAAZE00000094	CDS	4591628	4591917	+
GWHAAZE00000094	CDS	4592756	4592926	+
GWHAAZE00000094	CDS	4593104	4593347	+
GWHAAZE00000094	CDS	4593436	4593636	+
GWHAAZE00000094	CDS	4593741	4594216	+
GWHAAZE00000094	CDS	4594920	4595084	+
GWHAAZE00000094	CDS	4595236	4595479	+
GWHAAZE00000094	CDS	4595588	4596259	+

Transcript Sequence
>GWHTAAZE033350 ATGGCGAGATTATCGGTATTGGTGGTATTTTTGTTGGGTTTGATCAGTTACGGGTGGTGCCAAGAAGGAGGAAAATGGAAGATCCACACATTGTTTTCGGTTGAATGCCAAAATTACTTCGACTGGCAAACGGTAGGAGTGATGCACAGCTTCAAGAAGGCAAAGCAACCCGGACCCATCACCCGGCTACTCAGTTGTACGGACGAGGAGAAGAAGACTTACAAAGGAATGGACTTGGCTCCCACTTTTGAGGTCCCTTCTATGAGTAAACACCCCAAAACTGGAGACTGGTATCCTGCGATAAACAAACCAGCTGGAGTTGTCCACTGGCTTAAACATAGTAAAGATGCTGAAAATGTTGATTGGGTTGTGATACTAGATGCTGATATGATCATCCGTGGTCCAATCATACCATGGGAGCTTGGTGCTGAGAAAGGCAGGCCTGTTGCTGCATATTATGGGTACTTAAGGGGATGTGATAATGTTCTTGCTAAGTTGCATACAAAGCACCCTGAACTCTGTGATAAGGTTGGCGGGCTTTTGGCTATGCACATTGATGACCTTCGAGCTTTGGCTCCTATGTGGCTTTCTAAAACAGAAGAGGTACGAGAAGATAGAGCTCATTGGGGAACCAATATAACTGGTGACATTTATGCTCAAGGTTGGATCAGTGAGATGTATGGATACTCATTTGGTGCAGCTGAGGTAGGACTTCGGCACAAGATTAATGATAATTTAATGATCTACCCAGGGTATATCCCACGAGAAGGTGTTGAGCCTATTCTGATGCATTATGGCTTGCCATTTAGTGTTGGGAATTGGTCATTCAGTAAACTAGATCACCATGAAGACGGTATTGTTTATGATTGTGGCCGGCTTTTTCCTGAACCTCCTTATCCTAGAGAGGTAAAGGCAATGGAAGTAGATCCCAACAGAAGGAGGGGACTATTTTTGAGTATAGAATGTATAAATACTCTAAATGAAGGTCTTCTATTACAGCATGCGGCACATGGGTGTCCCAAGCCAAAGTGGTCAAAGTACTTGAGCTTATTAAAGAGCAAAACTTTTGCCGAACTAACTCGACCGAAAATGCCAACTCCGGAAACTCTAAAATTCATGGAGATTGAGCATCAAGTTCCAGATGTTGATGAACCAGACCAACCACATCCAAAAATACACACTGTTTTTTCAACGGAATGCACCCCTTACTTTGATTGGCAGACAGTAGGACTGGTTCACAGTTTTCATTTGAGCGGCCAGCCTGGAAATATCACTCGGCTTCTCAGCTGTACGGATGACGACTTGGAAAAATATAAAGGCCATGATCTGGCGCCAACACATTATGTTCCGTCCATGAGCCGACATCCGTTAACCGACGATTGGTATCCAGCAATCAATAAACCAGCTGCAGTCCTTCACTGGCTTAATCATGCAAATATTGATGCGGAGTTCATAGTAATCTTGGATGCTGACATGATTATGAGAGGACCAATTACACCTTGGGAGTTCAATGCAGCACGTGGGCGACCTGTTTCAACTCCCTACGAGTACCTAATTGGTTGTGACAATGAGCTTGCAAAGCTCCATACTCGTCATCCTGAAGCTTGTGACAAGGTTGGTGGTGTGATCATAATGCATATAGACGATCTCCGGAAGTTTGCTTTAATGTGGCTCCATAAAACAGAGGAGGTCCGAGCCGACACTGCTCATTACGGCAAAAACGTAACTGGAGATATCTATGAATCTGGGTGGATTAGCGAGATGTACGGTTACTCCTTTGGCGCAGCAGAGCTGAATTTGCGGCATCTCGTAAACAGTGAGATAATGATATACCCGGGATATATTCCTGAAAGTGGGGTCAAGTATAGAGTTTTCCATTATGGCTTGGAGTTTACAGTTGGAAACTGGAGTTTCGATAAAGCAAACTGGAGGGATGTTGACTTGATTAATGAATGCTGGGCTAAGTTCCCTGATCCTCCTGATCCTTCAACGCTCGATCCAACAGATGATAACGCGCTACAGCGGGACTTGCTTAGCATCGAGTGTGGAAAGATGCTTAATGAAGCTCTCCGTCTACACCATGAGTGGAGAAAATGTAATGATCCCAATTCTTTATCCACTTCAAATTTGGAGACGGACAATGAGGTAACTGTTTCGAGGAAGTTTGGAAAGATTGAAGAAATTAATGCCATAAGAAGTAATTCTATGTTGGTGAATGATTCTCAAGAATCGACAGTACCTGCGGTGGAGAACCAGAGATTTGGTTCTTTGAGGTTTTGGATCATTTGCCTATGGGCCTTTTCAATCTTGGGTTTCTTGGCAGTAATTTCGGTGGTGCTTTCAGGTCATAAGGGGCACAAAAAAAGAGGTAAAAGTTACAAGACTAAGAGAAGAGCTTCGTATGCTGGATTCTGGGACAGGAATGGTCCTGACAGACTTGGCCAGACAGCTGACGCTTTGTAG

Network for GWHGAAZE033311

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K20781	SGT1	Other types of O-glycan biosynthesis	map00514

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.676
	SRR3591706	second leaf	8.196
	SRR3591707	mature leaf	7.434
	SRR3591708	Shoot apex	9.782
	SRR3591709	Stem	13.726
	SRR3591710	White floral bud	8.792
	SRR3591711	White flower	11.774
	SRR3591712	Green floral bud	12.508
	SRR3591713	Yellow flower	9.808
SRP173429	SRR8316895	Juvenile bud stage	8.938
	SRR8316896	Juvenile bud stage	11.696
	SRR8316897	Juvenile bud stage	6.157
	SRR8316894	Third green stage	5.431
	SRR8316900	Third green stage	17.739
	SRR8316901	Third green stage	14.393
	SRR8316898	Complete white stage	4.878
	SRR8316899	Complete white stage	15.118
	SRR8316903	Complete white stage	7.495
	SRR8316902	Silver flowering stage	6.707
	SRR8316904	Silver flowering stage	11.627
	SRR8316905	Silver flowering stage	4.958
	SRR8316906	Gold flowering stage	20.341
	SRR8316907	Gold flowering stage	18.417
	SRR8316908	Gold flowering stage	26.725
SRP132670	SRR6706286	Control	16.979
	SRR6706287	Light intensity 50%	15.610
	SRR6706288	Light intensity 20%	15.909
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.275
	CNS0095593	Slightly white alabastrum(diploid) 2	10.021
	CNS0095594	Slightly white alabastrum(diploid) 3	10.195
	CNS0095595	Whole white alabastrum(diploid) 2	10.874
	CNS0095596	Whole white alabastrum(diploid) 3	10.833
	CNS0095597	Whole white alabastrum(diploid) 4	9.604
	CNS0095598	Silvery flower (diploied) 1	10.683
	CNS0095599	Silvery flower (diploied) 2	10.166
	CNS0095600	Silvery flower (diploied) 3	12.598
	CNS0095601	Golden flower (diploid) 1	10.002
	CNS0095602	Golden flower (diploid) 2	19.324
	CNS0095603	Golden flower (diploid) 3	18.403
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.668
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.798
	CNS0095606	Slightly white alabastrum(tetraploid) 3	17.363
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.617
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.158
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.833
	CNS0095610	Silvery flower (tetraploid) 1	13.034
	CNS0095611	Silvery flower (tetraploid) 2	9.610
	CNS0095612	Silvery flower (tetraploid) 3	13.358
	CNS0095613	Golden flower (tetraploid) 1	12.911
	CNS0095614	Golden flower (tetraploid) 2	22.953
	CNS0095615	Golden flower (tetraploid) 3	23.018
CRA001975	CRR073297	Stem 1	17.968
	CRR073298	Stem 2	15.118
	CRR073299	Stem 3	14.747
	CRR073300	Leaf 1	18.690
	CRR073301	Leaf 2	17.340
	CRR073302	Leaf 3	14.348
	CRR073303	Juvenile bud 1	13.968
	CRR073304	Juvenile bud 2	12.980
	CRR073305	Juvenile bud 3	14.908
	CRR073306	Third green 1	9.752
	CRR073307	Third green 2	5.752
	CRR073308	Third green 3	9.699
	CRR073309	Second white 1	7.358
	CRR073310	Second white 2	10.536
	CRR073311	Second white 3	12.727
	CRR073312	Silver flowering 1	16.685
	CRR073313	Silver flowering 2	13.292
	CRR073314	Silver flowering 3	8.912
	CRR073315	Gold flowering 1	9.053
	CRR073316	Gold flowering 2	14.345
	CRR073317	Gold flowering 3	7.877
	CRR073318	Tawny withering 1	21.738
	CRR073319	Tawny withering 2	18.576
	CRR073320	Tawny withering 3	14.444