Gene detail

Detail information of GWHGAAZE033309

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011097338.1	5.53909E-64	PREDICTED: cystinosin homolog isoform X2 [Sesamum indicum]
Swissprot	tr\|P57758\|CTNS_ARATH	4E-54	Cystinosin homolog
trEMBL	tr\|M1AY80\|M1AY80_SOLTU	2E-64	Uncharacterized protein {ECO:0000313\|EnsemblPlants:PGSC0003DMT400032863}
TAIR10	AT5G40670.1	2E-44	PQ-loop repeat family protein / transmembrane family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4546618	4551369	+
GWHAAZE00000094	mRNA	4546618	4551369	+
GWHAAZE00000094	exon	4546618	4546736	+
GWHAAZE00000094	exon	4546859	4546991	+
GWHAAZE00000094	exon	4548206	4548295	+
GWHAAZE00000094	exon	4548475	4548517	+
GWHAAZE00000094	exon	4548623	4548665	+
GWHAAZE00000094	exon	4550684	4550800	+
GWHAAZE00000094	exon	4550910	4550961	+
GWHAAZE00000094	exon	4551277	4551369	+
GWHAAZE00000094	CDS	4546618	4546736	+
GWHAAZE00000094	CDS	4546859	4546991	+
GWHAAZE00000094	CDS	4548206	4548295	+
GWHAAZE00000094	CDS	4548475	4548517	+
GWHAAZE00000094	CDS	4548623	4548642	+
GWHAAZE00000094	three_prime_UTR	4548643	4548665	+
GWHAAZE00000094	three_prime_UTR	4550684	4550800	+
GWHAAZE00000094	three_prime_UTR	4550910	4550961	+
GWHAAZE00000094	three_prime_UTR	4551277	4551369	+

Transcript Sequence
>GWHTAAZE033348 ATGGGGTCGTGGAATTCTGTACATATGGAGGTTTTGTACAATATTTTGGGATGGATAGCGTTTTGCTCTTGGTCCATCAGTTTCTATCCTCAAGTCATTTTGAATTTCCGAAGGAAAAGTGTTGTTGGGCTGAATTTCGATTTTGTGTTGTTGAATTTGACCAAGCACTCCTCTTATCTCATCTACAATGCCTCCGTCTTCTTTAGCTCTGCTATTCATAGGCAATACCGCAAGAAATATGGCCCGAATGAGATGATACCTGTAGCTGCAAATGATGTAGCTTTCTCGATCCATGCTGTTACACTGACTGCTTTTACCTTGGTCCAAATTGCAATATATGATCTTTGCCAAGCCAGTCCTGGCTTTGGTTGGTCTCCTGCTTTAACATATTGCAAGTTGTTATGACAATCATCAAATATATTCCCCAGGTTGTTATGAATTTTCGACGAAAGAGCACTGTAGGATTTAGCATTGGCAACATATTGCTTGATTTACTTGGAGGTTTAACAAATTATGGTCAAATGGTTGTGCAGTCAGTGGATCACATTCATGGGTTAATTTCTATGGAAATATAGGAAAGACATTGCTATCTTTGGTGTGTCTATCTTCTTTGACTTAATTTTCATCTTGTAACATTACATGCTATATCCTACCAAGAAAAGTGTAATCTTTACTAATCTTGATGCGGTA

Network for GWHGAAZE033309

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04193.15	PQ-loop	13	68	5.80E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12386	CTNS	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.664
	SRR3591706	second leaf	0.707
	SRR3591707	mature leaf	1.006
	SRR3591708	Shoot apex	0.662
	SRR3591709	Stem	0.869
	SRR3591710	White floral bud	3.997
	SRR3591711	White flower	2.682
	SRR3591712	Green floral bud	0.487
	SRR3591713	Yellow flower	1.009
SRP173429	SRR8316895	Juvenile bud stage	1.043
	SRR8316896	Juvenile bud stage	0.693
	SRR8316897	Juvenile bud stage	0.307
	SRR8316894	Third green stage	0.194
	SRR8316900	Third green stage	0.440
	SRR8316901	Third green stage	0.270
	SRR8316898	Complete white stage	0.065
	SRR8316899	Complete white stage	0.367
	SRR8316903	Complete white stage	0.231
	SRR8316902	Silver flowering stage	0.346
	SRR8316904	Silver flowering stage	0.511
	SRR8316905	Silver flowering stage	0.262
	SRR8316906	Gold flowering stage	0.465
	SRR8316907	Gold flowering stage	0.603
	SRR8316908	Gold flowering stage	0.066
SRP132670	SRR6706286	Control	0.117
	SRR6706287	Light intensity 50%	0.292
	SRR6706288	Light intensity 20%	0.110
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.077
	CNS0095593	Slightly white alabastrum(diploid) 2	0.344
	CNS0095594	Slightly white alabastrum(diploid) 3	1.239
	CNS0095595	Whole white alabastrum(diploid) 2	0.968
	CNS0095596	Whole white alabastrum(diploid) 3	0.470
	CNS0095597	Whole white alabastrum(diploid) 4	0.490
	CNS0095598	Silvery flower (diploied) 1	0.793
	CNS0095599	Silvery flower (diploied) 2	0.258
	CNS0095600	Silvery flower (diploied) 3	0.767
	CNS0095601	Golden flower (diploid) 1	0.870
	CNS0095602	Golden flower (diploid) 2	1.005
	CNS0095603	Golden flower (diploid) 3	0.762
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.898
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.261
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.676
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.398
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.776
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.162
	CNS0095610	Silvery flower (tetraploid) 1	2.289
	CNS0095611	Silvery flower (tetraploid) 2	1.467
	CNS0095612	Silvery flower (tetraploid) 3	1.672
	CNS0095613	Golden flower (tetraploid) 1	0.920
	CNS0095614	Golden flower (tetraploid) 2	2.889
	CNS0095615	Golden flower (tetraploid) 3	1.561
CRA001975	CRR073297	Stem 1	0.319
	CRR073298	Stem 2	0.263
	CRR073299	Stem 3	0.721
	CRR073300	Leaf 1	0.630
	CRR073301	Leaf 2	0.194
	CRR073302	Leaf 3	0.179
	CRR073303	Juvenile bud 1	0.092
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.197
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.059
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.057
	CRR073310	Second white 2	0.192
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.069
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.186
	CRR073315	Gold flowering 1	0.548
	CRR073316	Gold flowering 2	0.684
	CRR073317	Gold flowering 3	0.810
	CRR073318	Tawny withering 1	1.066
	CRR073319	Tawny withering 2	0.941
	CRR073320	Tawny withering 3	0.594