Gene detail

Detail information of GWHGAAZE033284

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002272711.2	0	PREDICTED: protein kinase PVPK-1 [Vitis vinifera]
COG	YP_593054.1	1E-19	serine/threonin protein kinase
Swissprot	tr\|P15792\|KPK1_PHAVU	0	Protein kinase PVPK-1
trEMBL	tr\|F6HUU7\|F6HUU7_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB58465.1}
TAIR10	AT5G47750.1	0	D6 protein kinase like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4244978	4247174	+
GWHAAZE00000094	mRNA	4244978	4247174	+
GWHAAZE00000094	exon	4244978	4245867	+
GWHAAZE00000094	exon	4246319	4247174	+
GWHAAZE00000094	CDS	4244978	4245867	+
GWHAAZE00000094	CDS	4246319	4247174	+

Transcript Sequence
>GWHTAAZE033323 ATGCCCGACTCATCGATTCACAAGCTCATATCAAGCAAGGGGAAATTGGAATTTGAGCACTCGAATGGAGTTGTTGATGAAAGGAAAGAAGATGAGGATTCTTCTCAAAAGCAGCTTTCGTCATTGGAAACCAAATCTTGCATGAAGCAACCTATTGGTGACTCCGATAGTTCTAATTCAAACAGGTCTTTGGAATCCGCGGATGTTTTAGAACTAGATAAAGTAGTTGTTGAGCATTCGAAAAGAGAACTACCCTCTGTTTGTCCAAGTCCTGAGAACAGTTTTCATTCTGTCACTATGTTTGTTGAAGCCAAAGAAAGCTTCACCAATACAGAACTGAGTGAATGTGTGAGCAGTGTTGAAAAATCTGGTGAAACTGGCGATATCAGCACCACTTGTGAATATGTTGAGAGCAGTAAGACAAGTATATGTAGAGGTAGCATTGACAGCAATGTTAGTGATGAGAGTATCTCAAGTAGTTTTAGTAGTACCATATACAAGCCCCACAAGGCAAATGATTTGGGATGGGAAGCAATCAAGGCCATTAGATCCCGTGATGGAGCGTTGGGATTGAACCATTTCAGGCTTTTAAAGAGATTGGGTGGTGGAGATATTGGCACTGTTTACTTGGCAGAGTTGACTGGAACAAGAAGTTATTTTGCCATGAAAGTGATGGAGAAAGCTGCTCTAGCAAGTCGAAAGAAGCTTTTGAGGGCTCAAACTGAAAGGGAGATATTGCAGTCTTTGGATCATCCGTTTCTGCCCACTTTGTATTCACATTTTGAGACAGAGAAGTTCTCTTGCTTGGTGATGGAATTTTGTCCAGGGGGAGATCTGCATTCGGTTCGCCAAAAACAACCTGGAAAGTATTTCCCCGAGCATGCTGCCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTATTTGCACATGCTTGGGATCATTTACAGAGACCTAAAACCGGAAAACGTACTAGTGAGGGAAGACGGGCATATAATGCTTTCGGATTTTGACCTCTCCCTAAGATGTGCTGTGAGCCCGACACTTGTCAGATCCACAAATTCTGGCTCAGATTCCAAGAACTCAGCATACTGTGCTCAACCTGCTTGTATTGAGCCGTCTTGCATAATCCAACCAGCTTGCATCCAACCTTCGTGTTTTGGACCACGCTTCCTTAGTAAGTCCAAGAAAGGAAAGAAGGTCAAACCAAAAACGGAATTATATAATCAAGTGAGACCTCTCCCGGAGTTAATTGCCGAACCTACAAGTGCCAGATCAATGTCCTTCGTGGGTACGCATGAGTACTTGGCACCCGAAATTATTAAAGGTGAAGGCCATGGAAGTGCAGTGGATTGGTGGACATTTGGGATCTTTCTCTATGAGCTCTTATTCGGGAAAACACCTTTCAAAGGGGCGGGCAACAGAGCTACTTTGTTTAATGTGGTCGGTCAGCCCCTAAGGTTTCCGGATTCACCTAATGCGAGTTTTGCTGCAAGGGATTTGATTAGAGGCTTACTCGTGAAGGAGCCACAACATCGTCTTGCCTATAGAAGAGGGGCTACTGAACTCAAACAACACCCGTTTTTTCAGAGCATAAATTGGGCACTCATTCGTTGCGCTAGTCCACCTGATGTTCCAAAATCGTTCGTACTAGCTGAATCGCCAAATACACACACTGTGGAGAAGGTACCGGGTGTTGATGTGAAGTCCTCTGGTAACTATTTAGAGATTGATTTCTTTTGA

Network for GWHGAAZE033284

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	195	347	2.70E-37
PF00069.26	Pkinase	427	530	6.50E-20

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	AGC_RSK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	16.481
	SRR3591706	second leaf	4.282
	SRR3591707	mature leaf	4.145
	SRR3591708	Shoot apex	9.445
	SRR3591709	Stem	11.377
	SRR3591710	White floral bud	12.007
	SRR3591711	White flower	9.662
	SRR3591712	Green floral bud	15.263
	SRR3591713	Yellow flower	5.690
SRP173429	SRR8316895	Juvenile bud stage	8.256
	SRR8316896	Juvenile bud stage	10.907
	SRR8316897	Juvenile bud stage	4.733
	SRR8316894	Third green stage	4.250
	SRR8316900	Third green stage	12.813
	SRR8316901	Third green stage	13.030
	SRR8316898	Complete white stage	5.488
	SRR8316899	Complete white stage	10.456
	SRR8316903	Complete white stage	6.735
	SRR8316902	Silver flowering stage	4.316
	SRR8316904	Silver flowering stage	6.448
	SRR8316905	Silver flowering stage	2.987
	SRR8316906	Gold flowering stage	8.314
	SRR8316907	Gold flowering stage	7.020
	SRR8316908	Gold flowering stage	8.009
SRP132670	SRR6706286	Control	7.600
	SRR6706287	Light intensity 50%	9.140
	SRR6706288	Light intensity 20%	9.716
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	8.013
	CNS0095593	Slightly white alabastrum(diploid) 2	8.883
	CNS0095594	Slightly white alabastrum(diploid) 3	8.923
	CNS0095595	Whole white alabastrum(diploid) 2	8.253
	CNS0095596	Whole white alabastrum(diploid) 3	9.602
	CNS0095597	Whole white alabastrum(diploid) 4	9.540
	CNS0095598	Silvery flower (diploied) 1	6.804
	CNS0095599	Silvery flower (diploied) 2	4.509
	CNS0095600	Silvery flower (diploied) 3	12.285
	CNS0095601	Golden flower (diploid) 1	6.071
	CNS0095602	Golden flower (diploid) 2	9.938
	CNS0095603	Golden flower (diploid) 3	10.597
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.750
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.960
	CNS0095606	Slightly white alabastrum(tetraploid) 3	18.430
	CNS0095607	Whole white alabastrum(tetraploid) 1	9.397
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.054
	CNS0095609	Whole white alabastrum(tetraploid) 3	17.173
	CNS0095610	Silvery flower (tetraploid) 1	12.246
	CNS0095611	Silvery flower (tetraploid) 2	14.378
	CNS0095612	Silvery flower (tetraploid) 3	21.242
	CNS0095613	Golden flower (tetraploid) 1	6.432
	CNS0095614	Golden flower (tetraploid) 2	9.612
	CNS0095615	Golden flower (tetraploid) 3	8.871
CRA001975	CRR073297	Stem 1	13.253
	CRR073298	Stem 2	12.220
	CRR073299	Stem 3	14.688
	CRR073300	Leaf 1	16.961
	CRR073301	Leaf 2	15.210
	CRR073302	Leaf 3	11.382
	CRR073303	Juvenile bud 1	14.695
	CRR073304	Juvenile bud 2	15.222
	CRR073305	Juvenile bud 3	17.520
	CRR073306	Third green 1	10.576
	CRR073307	Third green 2	7.880
	CRR073308	Third green 3	7.963
	CRR073309	Second white 1	7.834
	CRR073310	Second white 2	5.982
	CRR073311	Second white 3	6.158
	CRR073312	Silver flowering 1	6.233
	CRR073313	Silver flowering 2	6.007
	CRR073314	Silver flowering 3	2.342
	CRR073315	Gold flowering 1	3.468
	CRR073316	Gold flowering 2	5.566
	CRR073317	Gold flowering 3	5.910
	CRR073318	Tawny withering 1	8.066
	CRR073319	Tawny withering 2	5.233
	CRR073320	Tawny withering 3	6.844