Gene detail

Detail information of GWHGAAZE033282

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_010646763.1	2.6598E-115	PREDICTED: ABC transporter B family member 26, chloroplastic-like isoform X3 [Vitis vinifera]
COG	YP_006543215.1	4E-67	ABC transporter-related protein
Swissprot	tr\|Q8RY46\|AB26B_ARATH	1E-111	ABC transporter B family member 26, chloroplastic (Precursor)
trEMBL	tr\|A0A096TS21\|A0A096TS21_MAIZE	1E-131	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GRMZM2G432390_P01}
TAIR10	AT1G70610.1	6E-97	transporter associated with antigen processing protein 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	4220558	4228222	+
GWHAAZE00000094	mRNA	4220558	4228222	+
GWHAAZE00000094	exon	4220558	4220979	+
GWHAAZE00000094	exon	4222402	4222529	+
GWHAAZE00000094	exon	4223086	4223128	+
GWHAAZE00000094	exon	4223791	4223835	+
GWHAAZE00000094	exon	4223979	4224101	+
GWHAAZE00000094	exon	4224184	4224287	+
GWHAAZE00000094	exon	4224861	4224915	+
GWHAAZE00000094	exon	4225407	4225509	+
GWHAAZE00000094	exon	4226135	4226208	+
GWHAAZE00000094	exon	4226695	4226787	+
GWHAAZE00000094	exon	4226876	4226950	+
GWHAAZE00000094	exon	4227066	4227140	+
GWHAAZE00000094	exon	4227223	4227487	+
GWHAAZE00000094	exon	4227621	4227663	+
GWHAAZE00000094	exon	4227739	4227799	+
GWHAAZE00000094	exon	4228142	4228222	+
GWHAAZE00000094	five_prime_UTR	4220558	4220622	+
GWHAAZE00000094	CDS	4220623	4220979	+
GWHAAZE00000094	CDS	4222402	4222529	+
GWHAAZE00000094	CDS	4223086	4223128	+
GWHAAZE00000094	CDS	4223791	4223835	+
GWHAAZE00000094	CDS	4223979	4224101	+
GWHAAZE00000094	CDS	4224184	4224287	+
GWHAAZE00000094	CDS	4224861	4224915	+
GWHAAZE00000094	CDS	4225407	4225509	+
GWHAAZE00000094	CDS	4226135	4226208	+
GWHAAZE00000094	CDS	4226695	4226787	+
GWHAAZE00000094	CDS	4226876	4226950	+
GWHAAZE00000094	CDS	4227066	4227140	+
GWHAAZE00000094	CDS	4227223	4227487	+
GWHAAZE00000094	CDS	4227621	4227663	+
GWHAAZE00000094	CDS	4227739	4227799	+
GWHAAZE00000094	CDS	4228142	4228222	+

Transcript Sequence
>GWHTAAZE033321 ATGTCAAACTCAATGTTGAATTTCCATACTCACCCCACTACACCTCTCCTCACAGCAAACCTGTCATGATCCTAAACCCTAGTAAATTACATTCCAGCTTCAGCACCAAACTTAGAAGAAGCAACTGTTTCCACAATTCAAATTACGCCTCTGTAAGTAAAATCTCCGTTCTCAATAAAAATGGAGGCGAGGATAGTGGCAATAAAAAGGTGTTAGAAACTGTGAAGAGATGGGTGGTTATTATCCGGTCGGCTTGGCCGGGTGGAAGTTGGTGGGATTTACATGAAACCAAAGAAGAAGATGGTATGGTGGCCATGGCTGAGCCGTTGACTGTTTTACAGGCTCTCATTCGGATTTGGGAATTGGTTGCTCATGAGAGCTGGGTTTTGTATGCTGCATTTGGCTCCTTAATTATTGCGGCGATTTCCGAGATCTCACTACCTAATCTATTGGCATCATCAATCTTTTCTGCACAGAGTGGTGAAACTGCAGTGTTCTACAGAAATTTACAGCTCATGGTTTTATTGTGTTTCACCTCAGGAATATGCAGTGGCTTGCGGAGCGGCTGTTTTGAAATTGCAAATACAATCCTACTCAAGCGTCTAAGGGAAACTTTGTATGGAGCTCTTATTTTTCAGGATATATCCTTCTTTGACAATGAAGCTGTTGGTGACTTGACAAGCAGGCTTGGGGCTGATTGTCAAAGGTTGTCTCATGTTATTGGACATGATATACATTTAATATTACGAAATGTTCTTCAGGGGATAGGTGCTTTGGTAAATTTGCTGACATTATCTTGGCCTCTTGCACTTTCGACTTTGGCGATATGCTCTTTGATATCTGCAATTTTTCTAATTTATGGCCGGTACCAAAAGAAAGCAGCAAAGGTTACCCAGGACTTCACTGCTTGTGCTAATGAAGTACAAGCAATGGTTGGACAAAATAGCTTTTATAAGTACGCGAGAAAGTGCTGCACATGGATATTGGAGTCTGAGTTTTCACCTTCTCTACCGCTTAACACAGGAGTGAAACTGCAGAGGCTGATGGGGCATATTGAGTTTGTGAATGTGTTTTTTCACTACCCTTCAAGGATCGTGTGGAAGCACTCACCATCTCTATTTCACTCTGAACAGGCACCCATTCTAGAAAATCTGAACTTTTCTGTATTACCTAATGAAGTGGTTGCAATTGTTGGTCTGAGTGGTAGTGGGAAAAGCACATTAGTCAATCTTTTACTTCGTCTCTATGAGCCAACCCACGGTCAGATTTTAGTCGATGGTATTCCTCTTAGAGAGTTGGACATAAGATGGCTGAGGGAAAATATCGGATATGTTGGACAGGAACCCCATCTTTTTCGCATGGCAATCAAGTCAAACATAACTTATGGACTCTCAGGAGAGATTAAGCAGAAAGAGGTAGAAAGGGCCGCAAAGCAAGCATATGCGCATGATTTCATTTCATCCCTTCCAAATGGCTATGATACTGTTGTGGATGATGAGCTTCTCAGTGGAGGACAGAAGCAGAGGATTGCTATTGCCAGGGCCATTCTTAGGGAACCTGCTATTCTCATCCTTGATGAACCCACTAGTGCTCTGGATGCTGAAAATGGCACTAAAGCAAAAAGGACCGTCATTGTCATAGCGCATAGGCTATCCACAGTAAAAGCCGCAGACAGAATTGTGGTGATGGAGAGTGGTCGAATTGTTGAGATGGGTGACCACACGGAGCTTTTACGCAAGAATGGACTTTATGCCCGGCTAAACAGAATACAAACAGATGCATTAGCTTGA

Network for GWHGAAZE033282

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.24	ABC_membrane	118	284	1.40E-22
PF00005.28	ABC_tran	360	508	5.00E-36

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05656	ABCB9, TAPL	ABC transporters	map02010
K05656	ABCB9, TAPL	Lysosome	map04142

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0016021	cellular_component	integral component of membrane
GO:0005524	molecular_function	ATP binding
GO:0016887	molecular_function	ATPase activity
GO:0042626	molecular_function	ATPase-coupled transmembrane transporter activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.078
	SRR3591706	second leaf	5.325
	SRR3591707	mature leaf	8.160
	SRR3591708	Shoot apex	12.319
	SRR3591709	Stem	7.112
	SRR3591710	White floral bud	5.972
	SRR3591711	White flower	5.924
	SRR3591712	Green floral bud	9.526
	SRR3591713	Yellow flower	4.378
SRP173429	SRR8316895	Juvenile bud stage	5.374
	SRR8316896	Juvenile bud stage	5.762
	SRR8316897	Juvenile bud stage	2.874
	SRR8316894	Third green stage	3.969
	SRR8316900	Third green stage	7.963
	SRR8316901	Third green stage	7.537
	SRR8316898	Complete white stage	1.302
	SRR8316899	Complete white stage	10.649
	SRR8316903	Complete white stage	2.758
	SRR8316902	Silver flowering stage	1.205
	SRR8316904	Silver flowering stage	1.522
	SRR8316905	Silver flowering stage	0.542
	SRR8316906	Gold flowering stage	2.193
	SRR8316907	Gold flowering stage	1.477
	SRR8316908	Gold flowering stage	2.384
SRP132670	SRR6706286	Control	4.755
	SRR6706287	Light intensity 50%	5.382
	SRR6706288	Light intensity 20%	6.485
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.938
	CNS0095593	Slightly white alabastrum(diploid) 2	7.242
	CNS0095594	Slightly white alabastrum(diploid) 3	6.557
	CNS0095595	Whole white alabastrum(diploid) 2	4.382
	CNS0095596	Whole white alabastrum(diploid) 3	3.671
	CNS0095597	Whole white alabastrum(diploid) 4	3.816
	CNS0095598	Silvery flower (diploied) 1	12.461
	CNS0095599	Silvery flower (diploied) 2	4.820
	CNS0095600	Silvery flower (diploied) 3	3.288
	CNS0095601	Golden flower (diploid) 1	5.685
	CNS0095602	Golden flower (diploid) 2	3.763
	CNS0095603	Golden flower (diploid) 3	3.426
	CNS0095604	Slightly white alabastrum(tetraploid) 1	7.728
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.289
	CNS0095606	Slightly white alabastrum(tetraploid) 3	12.125
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.850
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.475
	CNS0095609	Whole white alabastrum(tetraploid) 3	7.800
	CNS0095610	Silvery flower (tetraploid) 1	4.273
	CNS0095611	Silvery flower (tetraploid) 2	4.675
	CNS0095612	Silvery flower (tetraploid) 3	2.305
	CNS0095613	Golden flower (tetraploid) 1	1.716
	CNS0095614	Golden flower (tetraploid) 2	3.375
	CNS0095615	Golden flower (tetraploid) 3	0.418
CRA001975	CRR073297	Stem 1	9.312
	CRR073298	Stem 2	7.397
	CRR073299	Stem 3	4.193
	CRR073300	Leaf 1	8.546
	CRR073301	Leaf 2	7.214
	CRR073302	Leaf 3	2.990
	CRR073303	Juvenile bud 1	3.161
	CRR073304	Juvenile bud 2	1.371
	CRR073305	Juvenile bud 3	4.299
	CRR073306	Third green 1	0.064
	CRR073307	Third green 2	0.118
	CRR073308	Third green 3	0.492
	CRR073309	Second white 1	0.095
	CRR073310	Second white 2	0.073
	CRR073311	Second white 3	0.198
	CRR073312	Silver flowering 1	0.225
	CRR073313	Silver flowering 2	0.328
	CRR073314	Silver flowering 3	0.324
	CRR073315	Gold flowering 1	2.920
	CRR073316	Gold flowering 2	8.662
	CRR073317	Gold flowering 3	4.183
	CRR073318	Tawny withering 1	4.551
	CRR073319	Tawny withering 2	5.859
	CRR073320	Tawny withering 3	5.806