Detail information of GWHGAAZE033274


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDP02072.11.33909E-77unnamed protein product [Coffea canephora]
Swissprottr|Q8L8Q3|LBD25_ARATH3E-64LOB domain-containing protein 25
trEMBLtr|A0A068U181|A0A068U181_COFCA5E-78Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313|EMBL:CDP02072.1}
TAIR10AT3G27650.12E-45LOB domain-containing protein 25

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene40630234063514-
GWHAAZE00000094mRNA40630234063514-
GWHAAZE00000094exon40630234063514-
GWHAAZE00000094CDS40630234063514-
Transcript Sequence

Network for GWHGAAZE033274

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03195.15LOB101065.70E-42
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyLOB

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.266
SRR3591706second leaf1.966
SRR3591707mature leaf1.069
SRR3591708Shoot apex6.299
SRR3591709Stem6.945
SRR3591710White floral bud32.323
SRR3591711White flower37.393
SRR3591712Green floral bud14.027
SRR3591713Yellow flower7.196
SRP173429 SRR8316895Juvenile bud stage 2.185
SRR8316896Juvenile bud stage 1.653
SRR8316897Juvenile bud stage 1.492
SRR8316894Third green stage 2.578
SRR8316900Third green stage 8.706
SRR8316901Third green stage 6.498
SRR8316898Complete white stage 5.437
SRR8316899Complete white stage 44.437
SRR8316903Complete white stage 12.195
SRR8316902Silver flowering stage7.379
SRR8316904Silver flowering stage5.792
SRR8316905Silver flowering stage0.871
SRR8316906Gold flowering stage 1.160
SRR8316907Gold flowering stage 4.088
SRR8316908Gold flowering stage 4.028
SRP132670SRR6706286Control15.386
SRR6706287Light intensity 50%14.924
SRR6706288Light intensity 20%13.516
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.594
CNS0095593Slightly white alabastrum(diploid) 211.334
CNS0095594Slightly white alabastrum(diploid) 35.531
CNS0095595Whole white alabastrum(diploid) 27.793
CNS0095596Whole white alabastrum(diploid) 30.642
CNS0095597Whole white alabastrum(diploid) 43.102
CNS0095598Silvery flower (diploied) 120.258
CNS0095599Silvery flower (diploied) 214.779
CNS0095600Silvery flower (diploied) 312.686
CNS0095601Golden flower (diploid) 116.708
CNS0095602Golden flower (diploid) 212.257
CNS0095603Golden flower (diploid) 310.580
CNS0095604Slightly white alabastrum(tetraploid) 117.043
CNS0095605Slightly white alabastrum(tetraploid) 29.290
CNS0095606Slightly white alabastrum(tetraploid) 325.223
CNS0095607Whole white alabastrum(tetraploid) 116.029
CNS0095608Whole white alabastrum(tetraploid) 29.072
CNS0095609Whole white alabastrum(tetraploid) 36.558
CNS0095610Silvery flower (tetraploid) 120.331
CNS0095611Silvery flower (tetraploid) 28.119
CNS0095612Silvery flower (tetraploid) 39.060
CNS0095613Golden flower (tetraploid) 12.771
CNS0095614Golden flower (tetraploid) 24.766
CNS0095615Golden flower (tetraploid) 32.248
CRA001975CRR073297Stem 12.428
CRR073298Stem 24.593
CRR073299Stem 34.740
CRR073300Leaf 17.457
CRR073301Leaf 29.672
CRR073302Leaf 33.525
CRR073303Juvenile bud 19.232
CRR073304Juvenile bud 23.845
CRR073305Juvenile bud 314.467
CRR073306Third green 10.530
CRR073307Third green 23.014
CRR073308Third green 33.461
CRR073309Second white 10.000
CRR073310Second white 20.000
CRR073311Second white 30.109
CRR073312Silver flowering 10.507
CRR073313Silver flowering 20.000
CRR073314Silver flowering 30.000
CRR073315Gold flowering 10.000
CRR073316Gold flowering 20.168
CRR073317Gold flowering 30.000
CRR073318Tawny withering 12.538
CRR073319Tawny withering 20.718
CRR073320Tawny withering 31.344