Gene detail

Detail information of GWHGAAZE033263

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009375127.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 14-like [Pyrus x bretschneideri]
COG	YP_004129364.1	5E-71	ATP-dependent RNA helicase
Swissprot	tr\|P46942\|DB10_NICSY	0	ATP-dependent RNA helicase-like protein DB10
trEMBL	tr\|A0A067LD75\|A0A067LD75_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP46436.1}
TAIR10	AT5G14610.2	2E-136	DEAD box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	3751464	3754584	+
GWHAAZE00000094	mRNA	3751464	3754584	+
GWHAAZE00000094	exon	3751464	3751889	+
GWHAAZE00000094	exon	3752169	3752446	+
GWHAAZE00000094	exon	3753219	3753524	+
GWHAAZE00000094	exon	3754063	3754584	+
GWHAAZE00000094	CDS	3751464	3751889	+
GWHAAZE00000094	CDS	3752169	3752446	+
GWHAAZE00000094	CDS	3753219	3753524	+
GWHAAZE00000094	CDS	3754063	3754282	+
GWHAAZE00000094	three_prime_UTR	3754283	3754584	+

Transcript Sequence
>GWHTAAZE033302 ATGCAAAGCTCCGCGCTATCGCAATTGAAAGCACTGGTTTTTTCTGACAAGTTTTCATATATTTTGATGTTGAAGTGCTTGTATGGTGGAGCTCCAAAGGGTCCCCAACTTAGGGAGTTAGACAGAGGTGCAGATATTGTGGTTGCAACTCCTGGGCGTTTGAATGATATACTAGAGATGAGAAGAGTAAGCCTCAGTCAAGTTTCATACTTGGTTTTAGACGAGGCAGACCGAATGCTGGACATGGGATTTGAACCTCAGATAAGGAAAATTGTGAATGAGGTTCCTGCTCGTCGCCAAACCCTCATGTACACTGCAACCTGGCCAAAGGAGGTTCGCAAAATTGCTTCCGATCTACTCGTTAATCCAGTTCAGGTTAACATCGGAAATGTTGACGAGCTTGTGGCTAACAAGTCTATCACCCAGAATGTTGAGGTTGTACCATCTATGGAGAAACAAAGACGAGTGGAGCAGATACTGAGATCTCAAGAACCTGGATCTAAGATCATTATCTTTTGTTCAACGAAGAAGATGTGCGATATGCTTTCCAGAAACTTGAATCGCAACTTTGGAGCTGCGGCCATACATGGAGATAAATCTCAGGGAGAGAGAGACCAAGTGTTGAGCCAGTTTCGTACTGGTAGGTGTCCTGTGCTTGTTGCTACTGATGTTGCAGCTCGTGGACTTGATGTTAAAGATATCAGGGTGGTTGTCAACTATGATTTTCCCACTGGAGTTGAGGACTACGTTCACAGGATAGGAAGGACTGGTAGGGCAGGCGCCACTGGAATTGCTTACACGTTCTTCGGTGAGCAGGATGCAAAGCATGCTTCAGATCTCATCAAAATTTTGGAAGGAGCAAATCAACACGTGCCCCCTGAGATCCGAGAAATGGCTTCACGTGGTGGTTTCGGTAGGTCTAGACCTCGGTGGGGTTCTGGTTCTGGATATGGTGGGCGCGATGGAGGCCATGGATATAGTGGAAGTTTTGACCGTGAAATACGTGACAGTGTGGATGCTACCCCTGCGGGGAGCTTTCACAGCAGGAGCTTCCATGAAAGCATGGGTCAAGCAGCAGGAGTGAAGCGCAGTAGGAGCCGGAGTAGAAGCCCCAGTAAGTGGGGTGCCCTCCAAACTGGGGCCCGCAGCCCAAGCCCTGAGAGGAGTGCAAATGAAAGAGCCCCGGCCCGCAGTTTTCATGAACTCATGATGCAGAAGGCTCGATCATGAGTGATAATCTTAGGCAATTGATTGAAGAAGATAAGGTATGCCATGTCGGTGGCTAGTGGTTTTTGGGGTGTTTTTTAATTTTTTTTACTTTTGTTGTAGAAAGTGGTGGGGCCTTGTGACTGACTGTTGCAAGGTGGAATGCAAGTTTTGGCGGACGACTTTTCCTTAGTTTTAAGAGGGTTAGACAATTAACTTATTTTTGATGGCCAATGTTTCCTATGCATAGCGTGCCATTCTTTAGGTAGAAAGTTGCAAGGCTCTTATGAAAAAATGTTCAAAGTGTTGTGGAACAACGAACGTAA

Network for GWHGAAZE033263

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.30	DEAD	14	115	3.80E-26
PF00271.32	Helicase_C	152	260	1.30E-33

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12823	DDX5, DBP2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.300
	SRR3591706	second leaf	19.371
	SRR3591707	mature leaf	19.026
	SRR3591708	Shoot apex	44.249
	SRR3591709	Stem	34.367
	SRR3591710	White floral bud	33.278
	SRR3591711	White flower	30.750
	SRR3591712	Green floral bud	40.515
	SRR3591713	Yellow flower	22.098
SRP173429	SRR8316895	Juvenile bud stage	23.507
	SRR8316896	Juvenile bud stage	31.300
	SRR8316897	Juvenile bud stage	13.035
	SRR8316894	Third green stage	10.112
	SRR8316900	Third green stage	26.058
	SRR8316901	Third green stage	25.735
	SRR8316898	Complete white stage	6.591
	SRR8316899	Complete white stage	29.465
	SRR8316903	Complete white stage	10.852
	SRR8316902	Silver flowering stage	5.996
	SRR8316904	Silver flowering stage	6.400
	SRR8316905	Silver flowering stage	2.971
	SRR8316906	Gold flowering stage	9.600
	SRR8316907	Gold flowering stage	8.877
	SRR8316908	Gold flowering stage	10.605
SRP132670	SRR6706286	Control	22.553
	SRR6706287	Light intensity 50%	23.046
	SRR6706288	Light intensity 20%	23.953
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	34.822
	CNS0095593	Slightly white alabastrum(diploid) 2	34.460
	CNS0095594	Slightly white alabastrum(diploid) 3	37.247
	CNS0095595	Whole white alabastrum(diploid) 2	29.644
	CNS0095596	Whole white alabastrum(diploid) 3	36.392
	CNS0095597	Whole white alabastrum(diploid) 4	29.217
	CNS0095598	Silvery flower (diploied) 1	26.076
	CNS0095599	Silvery flower (diploied) 2	18.829
	CNS0095600	Silvery flower (diploied) 3	14.979
	CNS0095601	Golden flower (diploid) 1	20.496
	CNS0095602	Golden flower (diploid) 2	17.767
	CNS0095603	Golden flower (diploid) 3	17.820
	CNS0095604	Slightly white alabastrum(tetraploid) 1	41.411
	CNS0095605	Slightly white alabastrum(tetraploid) 2	35.169
	CNS0095606	Slightly white alabastrum(tetraploid) 3	43.550
	CNS0095607	Whole white alabastrum(tetraploid) 1	32.298
	CNS0095608	Whole white alabastrum(tetraploid) 2	36.145
	CNS0095609	Whole white alabastrum(tetraploid) 3	33.100
	CNS0095610	Silvery flower (tetraploid) 1	17.859
	CNS0095611	Silvery flower (tetraploid) 2	22.128
	CNS0095612	Silvery flower (tetraploid) 3	14.655
	CNS0095613	Golden flower (tetraploid) 1	14.503
	CNS0095614	Golden flower (tetraploid) 2	20.291
	CNS0095615	Golden flower (tetraploid) 3	13.317
CRA001975	CRR073297	Stem 1	41.548
	CRR073298	Stem 2	33.467
	CRR073299	Stem 3	34.276
	CRR073300	Leaf 1	32.827
	CRR073301	Leaf 2	30.995
	CRR073302	Leaf 3	21.441
	CRR073303	Juvenile bud 1	25.264
	CRR073304	Juvenile bud 2	16.014
	CRR073305	Juvenile bud 3	31.205
	CRR073306	Third green 1	4.502
	CRR073307	Third green 2	7.095
	CRR073308	Third green 3	5.873
	CRR073309	Second white 1	2.701
	CRR073310	Second white 2	4.774
	CRR073311	Second white 3	2.990
	CRR073312	Silver flowering 1	4.058
	CRR073313	Silver flowering 2	5.319
	CRR073314	Silver flowering 3	5.465
	CRR073315	Gold flowering 1	11.199
	CRR073316	Gold flowering 2	17.639
	CRR073317	Gold flowering 3	12.610
	CRR073318	Tawny withering 1	37.070
	CRR073319	Tawny withering 2	32.063
	CRR073320	Tawny withering 3	39.141