Gene detail

Detail information of GWHGAAZE033262

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP02093.1	4.99315E-74	unnamed protein product [Coffea canephora]
COG	YP_003798803.1	0.000000001	ATP-dependent RNA helicase
Swissprot	tr\|Q9LYJ9\|RH46_ARATH	2E-67	DEAD-box ATP-dependent RNA helicase 46
trEMBL	tr\|A0A068U3A7\|A0A068U3A7_COFCA	2E-74	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02093.1}
TAIR10	AT5G14610.1	2E-55	DEAD box RNA helicase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	3745589	3749128	+
GWHAAZE00000094	mRNA	3745589	3749128	+
GWHAAZE00000094	exon	3745589	3745921	+
GWHAAZE00000094	exon	3746203	3746313	+
GWHAAZE00000094	exon	3748083	3748201	+
GWHAAZE00000094	exon	3748570	3748654	+
GWHAAZE00000094	exon	3748919	3749128	+
GWHAAZE00000094	CDS	3745589	3745921	+
GWHAAZE00000094	CDS	3746203	3746313	+
GWHAAZE00000094	CDS	3748083	3748201	+
GWHAAZE00000094	CDS	3748570	3748654	+
GWHAAZE00000094	CDS	3748919	3749128	+

Transcript Sequence
>GWHTAAZE033301 ATGGCTGCTGCTACTGTCTCTTCTGCTGGTCCACGATATGCGCCCGAGGATCCTACTCTACCCAAACCATGGAAAGGATTAGTTGATGGCAAGACTGGATATCTTTACTTTTGGAATCCAGAGACTAATGTTACCCAGTATGAGAGGCCTGTCTCCACATCACACACTGTCTCAGCTCCCTCACCCAAGCAGTCTGCTGTGCCTGTAAGTTCGTCAGTTCAAGTTCAGCAGTCTTCTCAAACACAACATACTCCACCAATAATGATGGTGGATACGGGGGAGGAGTCAGATGTGGGTCAGAGCTTGCTTCTGGAGCAAGTGGATACGAGGTTGAGTGCCAAATCAGGGTCTGATCATTTGCAAAATATTCCAAATGGGGCTGTAGGCTCTGGACTGGGTGTATCTCCGGAGGCTTATTGCAGTCGGCATGAAATTACTGTAACTGGAAGCAACGTACCACCACCTTTCACTTCATTTGAAGCTACCGGTCTTCCTGCAGAGATTCTTAGAGAGGTATGGATTTCTTTTGATTTTGTGCAGCTCTCTGGTGAGTGGGAACCTGTGTGCGATATTTGCTCCAAGGAGGAGCTAAATGTCGTACGCTGTGCCACCATGAGGGCTTGCATATATTTGGAGTGCCCTTATAAGGTACGCAGTGCTGGGTTCTCTGCCCCCACTCCGATACAGGCTCAGTCTTGGCCCATTGCTCTTCAAAGTCGTGATATAGTAGCTGTTGCCAAGACAGGTTCAGGGAAAACGTTGGGTTACTTGATTCCTAGCTTTGTTCTTCTCAAGCGGAGCCCCAAAATCCTCAAATGGGTCCAACTGTTTTGGTGTTGTCACCAACAAGAGAGTTAG

Network for GWHGAAZE033262

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00397.27	WW	20	50	7.50E-07
PF00270.30	DEAD	226	264	4.80E-09

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12823	DDX5, DBP2	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding
GO:0003676	molecular_function	nucleic acid binding
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	28.605
	SRR3591706	second leaf	16.088
	SRR3591707	mature leaf	10.940
	SRR3591708	Shoot apex	30.712
	SRR3591709	Stem	20.243
	SRR3591710	White floral bud	23.010
	SRR3591711	White flower	20.779
	SRR3591712	Green floral bud	27.144
	SRR3591713	Yellow flower	14.946
SRP173429	SRR8316895	Juvenile bud stage	14.213
	SRR8316896	Juvenile bud stage	19.724
	SRR8316897	Juvenile bud stage	5.440
	SRR8316894	Third green stage	7.743
	SRR8316900	Third green stage	19.840
	SRR8316901	Third green stage	19.133
	SRR8316898	Complete white stage	4.473
	SRR8316899	Complete white stage	17.451
	SRR8316903	Complete white stage	7.705
	SRR8316902	Silver flowering stage	3.629
	SRR8316904	Silver flowering stage	5.252
	SRR8316905	Silver flowering stage	2.351
	SRR8316906	Gold flowering stage	7.675
	SRR8316907	Gold flowering stage	6.725
	SRR8316908	Gold flowering stage	6.692
SRP132670	SRR6706286	Control	26.653
	SRR6706287	Light intensity 50%	27.960
	SRR6706288	Light intensity 20%	27.837
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.883
	CNS0095593	Slightly white alabastrum(diploid) 2	8.977
	CNS0095594	Slightly white alabastrum(diploid) 3	8.569
	CNS0095595	Whole white alabastrum(diploid) 2	11.203
	CNS0095596	Whole white alabastrum(diploid) 3	10.988
	CNS0095597	Whole white alabastrum(diploid) 4	10.857
	CNS0095598	Silvery flower (diploied) 1	12.222
	CNS0095599	Silvery flower (diploied) 2	8.449
	CNS0095600	Silvery flower (diploied) 3	14.666
	CNS0095601	Golden flower (diploid) 1	6.321
	CNS0095602	Golden flower (diploid) 2	13.140
	CNS0095603	Golden flower (diploid) 3	12.377
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.805
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.314
	CNS0095606	Slightly white alabastrum(tetraploid) 3	26.225
	CNS0095607	Whole white alabastrum(tetraploid) 1	14.786
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.613
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.042
	CNS0095610	Silvery flower (tetraploid) 1	10.991
	CNS0095611	Silvery flower (tetraploid) 2	13.879
	CNS0095612	Silvery flower (tetraploid) 3	10.442
	CNS0095613	Golden flower (tetraploid) 1	4.958
	CNS0095614	Golden flower (tetraploid) 2	12.809
	CNS0095615	Golden flower (tetraploid) 3	11.592
CRA001975	CRR073297	Stem 1	31.185
	CRR073298	Stem 2	30.633
	CRR073299	Stem 3	32.135
	CRR073300	Leaf 1	29.740
	CRR073301	Leaf 2	24.898
	CRR073302	Leaf 3	23.334
	CRR073303	Juvenile bud 1	19.867
	CRR073304	Juvenile bud 2	13.156
	CRR073305	Juvenile bud 3	26.493
	CRR073306	Third green 1	4.567
	CRR073307	Third green 2	3.824
	CRR073308	Third green 3	5.131
	CRR073309	Second white 1	4.297
	CRR073310	Second white 2	2.884
	CRR073311	Second white 3	1.645
	CRR073312	Silver flowering 1	4.348
	CRR073313	Silver flowering 2	2.990
	CRR073314	Silver flowering 3	4.071
	CRR073315	Gold flowering 1	8.522
	CRR073316	Gold flowering 2	12.011
	CRR073317	Gold flowering 3	13.572
	CRR073318	Tawny withering 1	18.880
	CRR073319	Tawny withering 2	13.834
	CRR073320	Tawny withering 3	24.131