Gene detail

Detail information of GWHGAAZE033258

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007031494.1	0	Monodehydroascorbate reductase 4 isoform 2 [Theobroma cacao]
COG	YP_824941.1	6E-54	FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Swissprot	tr\|Q9LK94\|MDAR2_ARATH	0	Probable monodehydroascorbate reductase, cytoplasmic isoform 2
trEMBL	tr\|A0A061EBP7\|A0A061EBP7_THECC	0	Monodehydroascorbate reductase 4 isoform 2 {ECO:0000313\|EMBL:EOY02420.1}
TAIR10	AT3G27820.1	9E-150	monodehydroascorbate reductase 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	3656892	3662167	-
GWHAAZE00000094	mRNA	3656892	3662167	-
GWHAAZE00000094	exon	3656892	3657125	-
GWHAAZE00000094	exon	3657261	3657379	-
GWHAAZE00000094	exon	3658104	3658323	-
GWHAAZE00000094	exon	3658959	3659077	-
GWHAAZE00000094	exon	3659371	3659451	-
GWHAAZE00000094	exon	3659957	3660008	-
GWHAAZE00000094	exon	3662048	3662167	-
GWHAAZE00000094	CDS	3662048	3662167	-
GWHAAZE00000094	CDS	3659957	3660008	-
GWHAAZE00000094	CDS	3659371	3659451	-
GWHAAZE00000094	CDS	3658959	3659077	-
GWHAAZE00000094	CDS	3658104	3658323	-
GWHAAZE00000094	CDS	3657261	3657379	-
GWHAAZE00000094	CDS	3656892	3657125	-

Transcript Sequence
>GWHTAAZE033297 ATGGGAAGAGCATTTGTGTATGTGATATTAGGAGGAGGAGTTGCCGCGGGTTATGCAGCTCTTGAATTCACCAAGAGAGGTGTCTCTCATGGTGAACTCTGCATCATCTCCGAAGAACCTGTTGTGCCTTATGAGAGACCGGCATTAAGCAAAGGATTTTTACTTCCAGAAGATCCAGCGCGGCTCCCTTCATTTCACACTTGTGTAGGTGCAAATGAGGAGAGGTTAACCCCAAAATGGTACAAGGAGCATGGAATCGAACTCGTTCTTGGAACTCGAGTTAAGTCTGCTGATGTGAGGAGGAAGACGCTATTGACAGCAACTGGGGAAACTATCAGCTACAAAATTCTCATTGTTGCAACAGGTGCTCGGGCTTTGAAGCTTGAAGAGTTCGGTGTGAGTGGATCAGATGCTGAAAATGTATGTTATTTACGGGATTTGGCCGATGCAACCAGGATTGTCCGTGTTATGGAGACATGTAGCGGTGGGAATGCTATTGTCATAGGTGGCGGCTATATAGGAATGGAATGTGCCGCTTCTTTGGTTATAAATAAAATAAATGTTACCATGGTTTTTCCAGAGGCACATTGCATGGGCCGTTTATTTACACCGAAGATAGCTAGTTATTATGAAGATTATTACAACTCTAAAGGAGTAAAGTTTGTCAAGGGAACTGTCTTGTCATCGTTCGAGTTCAACTCCGAGGGAAAGGTTACAGCAGTTAATCTTAGAGATGGAACACAACTCCCTGCTGATATGGTGGTTGTAGGAATCGGAATCCGTCCAAACACAAGCCTATTTGAAGGCCAACTAACTCTAGAAAAAGGAGGGATCAAAGTAAATGGCCAGTTACAGTCTAGCAACAGCTCGGTCTACGCTGTTGGTGATGTGGCAACCTTTCCGGTCAAACTTTTCGGCGACACCCGCAGGCTTCGAGCATGTTGA

Network for GWHGAAZE033258

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF07992.15	Pyr_redox_2	7	298	2.00E-51

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K08232	E1.6.5.4	Metabolic pathways	map01100
K08232	E1.6.5.4	Ascorbate and aldarate metabolism	map00053

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016491	molecular_function	oxidoreductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	25.176
	SRR3591706	second leaf	69.743
	SRR3591707	mature leaf	70.123
	SRR3591708	Shoot apex	29.571
	SRR3591709	Stem	29.844
	SRR3591710	White floral bud	40.925
	SRR3591711	White flower	32.817
	SRR3591712	Green floral bud	35.740
	SRR3591713	Yellow flower	28.760
SRP173429	SRR8316895	Juvenile bud stage	17.275
	SRR8316896	Juvenile bud stage	24.206
	SRR8316897	Juvenile bud stage	13.039
	SRR8316894	Third green stage	11.407
	SRR8316900	Third green stage	31.054
	SRR8316901	Third green stage	30.418
	SRR8316898	Complete white stage	29.780
	SRR8316899	Complete white stage	45.564
	SRR8316903	Complete white stage	56.905
	SRR8316902	Silver flowering stage	16.447
	SRR8316904	Silver flowering stage	28.374
	SRR8316905	Silver flowering stage	11.416
	SRR8316906	Gold flowering stage	29.699
	SRR8316907	Gold flowering stage	33.935
	SRR8316908	Gold flowering stage	28.732
SRP132670	SRR6706286	Control	38.298
	SRR6706287	Light intensity 50%	38.975
	SRR6706288	Light intensity 20%	36.337
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.735
	CNS0095593	Slightly white alabastrum(diploid) 2	13.549
	CNS0095594	Slightly white alabastrum(diploid) 3	14.146
	CNS0095595	Whole white alabastrum(diploid) 2	12.425
	CNS0095596	Whole white alabastrum(diploid) 3	15.096
	CNS0095597	Whole white alabastrum(diploid) 4	11.048
	CNS0095598	Silvery flower (diploied) 1	28.344
	CNS0095599	Silvery flower (diploied) 2	20.869
	CNS0095600	Silvery flower (diploied) 3	37.902
	CNS0095601	Golden flower (diploid) 1	19.551
	CNS0095602	Golden flower (diploid) 2	38.822
	CNS0095603	Golden flower (diploid) 3	39.666
	CNS0095604	Slightly white alabastrum(tetraploid) 1	14.686
	CNS0095605	Slightly white alabastrum(tetraploid) 2	13.763
	CNS0095606	Slightly white alabastrum(tetraploid) 3	27.235
	CNS0095607	Whole white alabastrum(tetraploid) 1	11.368
	CNS0095608	Whole white alabastrum(tetraploid) 2	12.070
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.637
	CNS0095610	Silvery flower (tetraploid) 1	37.825
	CNS0095611	Silvery flower (tetraploid) 2	32.898
	CNS0095612	Silvery flower (tetraploid) 3	67.060
	CNS0095613	Golden flower (tetraploid) 1	21.638
	CNS0095614	Golden flower (tetraploid) 2	34.037
	CNS0095615	Golden flower (tetraploid) 3	22.539
CRA001975	CRR073297	Stem 1	35.112
	CRR073298	Stem 2	34.281
	CRR073299	Stem 3	31.325
	CRR073300	Leaf 1	38.426
	CRR073301	Leaf 2	29.987
	CRR073302	Leaf 3	27.122
	CRR073303	Juvenile bud 1	25.516
	CRR073304	Juvenile bud 2	115.229
	CRR073305	Juvenile bud 3	34.901
	CRR073306	Third green 1	21.048
	CRR073307	Third green 2	24.756
	CRR073308	Third green 3	22.195
	CRR073309	Second white 1	22.264
	CRR073310	Second white 2	19.944
	CRR073311	Second white 3	25.215
	CRR073312	Silver flowering 1	27.053
	CRR073313	Silver flowering 2	23.488
	CRR073314	Silver flowering 3	25.769
	CRR073315	Gold flowering 1	84.860
	CRR073316	Gold flowering 2	141.193
	CRR073317	Gold flowering 3	81.094
	CRR073318	Tawny withering 1	26.955
	CRR073319	Tawny withering 2	18.628
	CRR073320	Tawny withering 3	23.413