Detail information of GWHGAAZE033255


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010316288.14.80464E-78PREDICTED: 50S ribosomal protein L12, chloroplastic [Solanum lycopersicum]
COGYP_007144306.11E-2950S ribosomal protein L12
Swissprottr|P36688|RK12_NICSY6E-7450S ribosomal protein L12, chloroplastic (Precursor)
trEMBLtr|K4BBI0|K4BBI0_SOLLC2E-78Uncharacterized protein {ECO:0000313|EnsemblPlants:Solyc02g086730.1.1}
TAIR10AT3G27830.11E-25ribosomal protein L12-A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000094gene36544813655044-
GWHAAZE00000094mRNA36544813655044-
GWHAAZE00000094exon36544813655044-
GWHAAZE00000094CDS36544813655044-
Transcript Sequence

Network for GWHGAAZE033255

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16320.6Ribosomal_L12_N621103.40E-13
PF00542.20Ribosomal_L121201862.40E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02935RP-L7, MRPL12, rplL Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf306.597
SRR3591706second leaf726.058
SRR3591707mature leaf381.546
SRR3591708Shoot apex592.406
SRR3591709Stem91.302
SRR3591710White floral bud159.025
SRR3591711White flower132.731
SRR3591712Green floral bud144.034
SRR3591713Yellow flower163.382
SRP173429 SRR8316895Juvenile bud stage 223.042
SRR8316896Juvenile bud stage 207.851
SRR8316897Juvenile bud stage 121.952
SRR8316894Third green stage 85.629
SRR8316900Third green stage 305.200
SRR8316901Third green stage 262.178
SRR8316898Complete white stage 112.106
SRR8316899Complete white stage 166.401
SRR8316903Complete white stage 185.736
SRR8316902Silver flowering stage97.928
SRR8316904Silver flowering stage103.085
SRR8316905Silver flowering stage80.824
SRR8316906Gold flowering stage 162.927
SRR8316907Gold flowering stage 173.433
SRR8316908Gold flowering stage 188.025
SRP132670SRR6706286Control294.524
SRR6706287Light intensity 50%276.561
SRR6706288Light intensity 20%283.488
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1156.548
CNS0095593Slightly white alabastrum(diploid) 2144.133
CNS0095594Slightly white alabastrum(diploid) 3106.567
CNS0095595Whole white alabastrum(diploid) 2118.909
CNS0095596Whole white alabastrum(diploid) 3136.639
CNS0095597Whole white alabastrum(diploid) 490.906
CNS0095598Silvery flower (diploied) 1208.877
CNS0095599Silvery flower (diploied) 2188.882
CNS0095600Silvery flower (diploied) 3215.408
CNS0095601Golden flower (diploid) 1166.746
CNS0095602Golden flower (diploid) 2200.569
CNS0095603Golden flower (diploid) 3198.405
CNS0095604Slightly white alabastrum(tetraploid) 1123.640
CNS0095605Slightly white alabastrum(tetraploid) 2125.116
CNS0095606Slightly white alabastrum(tetraploid) 3149.865
CNS0095607Whole white alabastrum(tetraploid) 155.669
CNS0095608Whole white alabastrum(tetraploid) 285.227
CNS0095609Whole white alabastrum(tetraploid) 3154.716
CNS0095610Silvery flower (tetraploid) 1139.257
CNS0095611Silvery flower (tetraploid) 2231.905
CNS0095612Silvery flower (tetraploid) 3231.853
CNS0095613Golden flower (tetraploid) 1155.927
CNS0095614Golden flower (tetraploid) 2154.582
CNS0095615Golden flower (tetraploid) 3282.292
CRA001975CRR073297Stem 1356.016
CRR073298Stem 2327.417
CRR073299Stem 3479.027
CRR073300Leaf 1180.527
CRR073301Leaf 2234.446
CRR073302Leaf 3236.202
CRR073303Juvenile bud 1219.855
CRR073304Juvenile bud 2379.105
CRR073305Juvenile bud 3227.277
CRR073306Third green 1321.267
CRR073307Third green 2245.180
CRR073308Third green 3217.853
CRR073309Second white 1416.448
CRR073310Second white 2209.071
CRR073311Second white 3178.134
CRR073312Silver flowering 1247.956
CRR073313Silver flowering 2335.283
CRR073314Silver flowering 3258.377
CRR073315Gold flowering 1901.206
CRR073316Gold flowering 2883.955
CRR073317Gold flowering 31087.993
CRR073318Tawny withering 1242.347
CRR073319Tawny withering 2238.996
CRR073320Tawny withering 3257.102