Gene detail

Detail information of GWHGAAZE033249

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KHG06504.1	3.1843E-118	Serine/threonine-protein kinase fray2 [Gossypium arboreum]
COG	YP_003371239.1	5E-22	serine/threonine protein kinase
Swissprot	tr\|O23304\|BLUS1_ARATH	3E-59	Serine/threonine-protein kinase BLUS1
trEMBL	tr\|V7BYK5\|V7BYK5_PHAVU	5E-118	Uncharacterized protein {ECO:0000313\|EMBL:ESW23019.1}
TAIR10	AT5G14720.1	3E-92	Protein kinase superfamily protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	3592339	3594530	+
GWHAAZE00000094	mRNA	3592339	3594530	+
GWHAAZE00000094	exon	3592339	3592506	+
GWHAAZE00000094	exon	3593546	3593806	+
GWHAAZE00000094	exon	3594263	3594387	+
GWHAAZE00000094	exon	3594476	3594530	+
GWHAAZE00000094	CDS	3592339	3592506	+
GWHAAZE00000094	CDS	3593546	3593806	+
GWHAAZE00000094	CDS	3594263	3594387	+
GWHAAZE00000094	CDS	3594476	3594530	+

Transcript Sequence
>GWHTAAZE033288 ATGAAACCAGGATCAGAAATGAAGTTTCCTGTCAATGCTGATGATTACAAGCTATATGAGGAAATTGGGGAAGGTGTCAGTGCCACTGTATACAAGGCTCTTTGTATACCACTTAGTCAGATAGTTGCTATCAAGGTTCTTGACTTGGAAAAGTGTAATGATGACTTGGATGGTATCCGCAGAGAGGTACAAACAATGAGCTTAATTGATCATCCAAACTTGTTAAGGGCGCATTGTTCGTTCACTACTGGCCACAATCTTTGGATAGTGATGCCATACATGGCTGGGGGATCGTGCCTTCATATAATGAAATCTACTTATCCTGAAGGTTTTGAAGAACCTGTTATTTCTACATTATTACTGGCGGTTCTTAAAGCACTTGTTTATCTTCATACCCATGGATTCATCCACAGAGACGTGAAGGTATCGGCTGGGAACATATTAATTGATTCTAATGGCACCGTTAAGTTAGCTGACTTAGGAGTATCTGCATGCATGTTTGATACTGGGGATAGGCAACGTTCAAGAAAGACTTTTGTTGGGACTCCTTGCTGGATGGCACCTGAAGTTATGGATTCTGAGCGTCGATCAGGATATGATTTTAAGTGA

Network for GWHGAAZE033249

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	16	195	6.20E-40

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	STE_STE20-Fray

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0005524	molecular_function	ATP binding
GO:0004672	molecular_function	protein kinase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	5.276
	SRR3591706	second leaf	3.278
	SRR3591707	mature leaf	2.327
	SRR3591708	Shoot apex	2.670
	SRR3591709	Stem	9.172
	SRR3591710	White floral bud	6.709
	SRR3591711	White flower	8.467
	SRR3591712	Green floral bud	5.857
	SRR3591713	Yellow flower	9.787
SRP173429	SRR8316895	Juvenile bud stage	3.764
	SRR8316896	Juvenile bud stage	8.681
	SRR8316897	Juvenile bud stage	1.723
	SRR8316894	Third green stage	6.214
	SRR8316900	Third green stage	3.496
	SRR8316901	Third green stage	4.760
	SRR8316898	Complete white stage	2.834
	SRR8316899	Complete white stage	2.761
	SRR8316903	Complete white stage	3.738
	SRR8316902	Silver flowering stage	2.227
	SRR8316904	Silver flowering stage	5.711
	SRR8316905	Silver flowering stage	1.568
	SRR8316906	Gold flowering stage	7.992
	SRR8316907	Gold flowering stage	6.059
	SRR8316908	Gold flowering stage	3.879
SRP132670	SRR6706286	Control	5.157
	SRR6706287	Light intensity 50%	6.931
	SRR6706288	Light intensity 20%	5.227
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	1.258
	CNS0095593	Slightly white alabastrum(diploid) 2	2.328
	CNS0095594	Slightly white alabastrum(diploid) 3	2.405
	CNS0095595	Whole white alabastrum(diploid) 2	0.597
	CNS0095596	Whole white alabastrum(diploid) 3	1.611
	CNS0095597	Whole white alabastrum(diploid) 4	0.205
	CNS0095598	Silvery flower (diploied) 1	2.200
	CNS0095599	Silvery flower (diploied) 2	2.133
	CNS0095600	Silvery flower (diploied) 3	5.125
	CNS0095601	Golden flower (diploid) 1	1.552
	CNS0095602	Golden flower (diploid) 2	4.430
	CNS0095603	Golden flower (diploid) 3	3.752
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.152
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.137
	CNS0095606	Slightly white alabastrum(tetraploid) 3	6.061
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.331
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.001
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.386
	CNS0095610	Silvery flower (tetraploid) 1	10.893
	CNS0095611	Silvery flower (tetraploid) 2	9.543
	CNS0095612	Silvery flower (tetraploid) 3	6.000
	CNS0095613	Golden flower (tetraploid) 1	8.691
	CNS0095614	Golden flower (tetraploid) 2	8.119
	CNS0095615	Golden flower (tetraploid) 3	6.439
CRA001975	CRR073297	Stem 1	5.045
	CRR073298	Stem 2	3.877
	CRR073299	Stem 3	1.435
	CRR073300	Leaf 1	2.173
	CRR073301	Leaf 2	2.322
	CRR073302	Leaf 3	0.442
	CRR073303	Juvenile bud 1	1.414
	CRR073304	Juvenile bud 2	2.134
	CRR073305	Juvenile bud 3	1.576
	CRR073306	Third green 1	0.157
	CRR073307	Third green 2	1.026
	CRR073308	Third green 3	0.204
	CRR073309	Second white 1	0.423
	CRR073310	Second white 2	1.612
	CRR073311	Second white 3	0.799
	CRR073312	Silver flowering 1	0.388
	CRR073313	Silver flowering 2	0.214
	CRR073314	Silver flowering 3	0.410
	CRR073315	Gold flowering 1	0.682
	CRR073316	Gold flowering 2	0.943
	CRR073317	Gold flowering 3	0.846
	CRR073318	Tawny withering 1	0.934
	CRR073319	Tawny withering 2	0.612
	CRR073320	Tawny withering 3	3.074