Gene detail

Detail information of GWHGAAZE033240

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_008379796.1	1.1359E-164	PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g28960 [Malus domestica]
COG	YP_005583842.1	1E-26	putative serine/threonine protein kinase
Swissprot	tr\|Q9LIG2\|RLK6_ARATH	4E-59	Receptor-like protein kinase At3g21340 (Precursor)
trEMBL	tr\|A0A061ED60\|A0A061ED60_THECC	4E-164	Serine-threonine protein kinase, putative {ECO:0000313\|EMBL:EOY02352.1}
TAIR10	AT3G21340.1	4E-50	Leucine-rich repeat protein kinase family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	3429874	3431703	-
GWHAAZE00000094	mRNA	3429874	3431703	-
GWHAAZE00000094	exon	3429874	3430095	-
GWHAAZE00000094	exon	3430207	3430467	-
GWHAAZE00000094	exon	3430962	3431077	-
GWHAAZE00000094	exon	3431182	3431400	-
GWHAAZE00000094	exon	3431497	3431587	-
GWHAAZE00000094	exon	3431701	3431703	-
GWHAAZE00000094	CDS	3431701	3431703	-
GWHAAZE00000094	CDS	3431497	3431587	-
GWHAAZE00000094	CDS	3431182	3431400	-
GWHAAZE00000094	CDS	3430962	3431077	-
GWHAAZE00000094	CDS	3430207	3430467	-
GWHAAZE00000094	CDS	3429874	3430095	-

Transcript Sequence
>GWHTAAZE033279 ATGGAATCTGGTAATTTAAAAGTCTCAATCAAGGAGGTCTATTCTGCCACGGACAATCTAAATGAAATGAACTTCATTGGTGAAGGAACAGCAGGCAAGGTGTATAAAGGCAAACTATCGAACAGTCAGGATGTAGCGGTCAAGCACATAATCAACGATGGATTTGTGGAGACTTTTCTCAGGGAAGTTAGAAGCTTAGCGCATGTTAGACACCCTAACCTAGTGGCTTTGTTGGGATATAGCGAAAATGGTGATGAATGTTTCCTCATTTATGAGCTGTGTACCAATGGAAATCTCTCAGAGTGGCTTTTTGGGAAGGATAAAGCCCTGTCATGGATTCAAAGGCTTCATGTGGCAATCGATAGCGCTCGAGGACTTTGGTTTCTACACACATATCCTCAAGGATGCATTGTTCACCGTGATATCAAGCCAACAAACATACTCCTAGGGAGGAACTTTGAAGCCAAGCTTTCAGACTTCGGGTTGTCTAAGGTCATTGACCTTGGAGAAACCTACGCAAGCTCAGAGGTGAGAGGAACGTTTGGTTATGTGGATCCCGAGTACCAAAATAACCGGCAAGTGAAGGCAGCAGGTGATGTGTACAGTTTTGGAATAGTACTTCTACAGCTCCTATCAGGAAGAAGGGTTATAAATATGAATGTGAAGAAACCAATGCCAATAGATAAAATGGCAAAGTCTCTTACCAAAGATAGCAGCATAGTAGCATTTGCAGATCCAAAACTTGAAGGAGAACACTCAGAAGCCGCATTTGAGCTTGCATTTAAGTTAGCTCTATCGTGCATATCTCTTGAGCAACAGAGACCGTCAATGGAGCAAGTTGTTGTAAAATTAGATGAGGCCATTGAGATATCAACAAAGGCCAGAGCGTCAACTCCTTATGCTACACCATAA

Network for GWHGAAZE033240

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00069.26	Pkinase	22	281	9.20E-42

Protein Sequence

Gene family

Gene family	subfamily
Protein Kinases Family	RLK-Pelle_URK-2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006468	biological_process	protein phosphorylation
GO:0004672	molecular_function	protein kinase activity
GO:0005524	molecular_function	ATP binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.084
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.185
	SRR3591711	White flower	0.509
	SRR3591712	Green floral bud	0.205
	SRR3591713	Yellow flower	0.343
SRP173429	SRR8316895	Juvenile bud stage	0.000
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.000
	SRR8316900	Third green stage	0.285
	SRR8316901	Third green stage	0.000
	SRR8316898	Complete white stage	0.094
	SRR8316899	Complete white stage	0.113
	SRR8316903	Complete white stage	0.041
	SRR8316902	Silver flowering stage	0.050
	SRR8316904	Silver flowering stage	0.135
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.467
	SRR8316907	Gold flowering stage	0.352
	SRR8316908	Gold flowering stage	0.468
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.000
	SRR6706288	Light intensity 20%	0.008
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.000
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.000
	CNS0095596	Whole white alabastrum(diploid) 3	0.214
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.394
	CNS0095599	Silvery flower (diploied) 2	0.105
	CNS0095600	Silvery flower (diploied) 3	0.305
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.127
	CNS0095603	Golden flower (diploid) 3	0.065
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.196
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.092
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.031
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.396
	CNS0095611	Silvery flower (tetraploid) 2	0.483
	CNS0095612	Silvery flower (tetraploid) 3	0.487
	CNS0095613	Golden flower (tetraploid) 1	0.235
	CNS0095614	Golden flower (tetraploid) 2	0.176
	CNS0095615	Golden flower (tetraploid) 3	0.179
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.070
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.003
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.199
	CRR073306	Third green 1	0.010
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.064
	CRR073309	Second white 1	0.046
	CRR073310	Second white 2	0.558
	CRR073311	Second white 3	0.261
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.179
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.474
	CRR073316	Gold flowering 2	0.156
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.090