Gene detail

Detail information of GWHGAAZE033204

Functional Annotation

Database	Orthologs	Annotation
Nr	CDP02173.1	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q9LFQ3\|SNL2_ARATH	Paired amphipathic helix protein Sin3-like 2
trEMBL	tr\|A0A068U3L3\|A0A068U3L3_COFCA	Coffea canephora DH200=94 genomic scaffold, scaffold_8 {ECO:0000313\|EMBL:CDP02173.1}
TAIR10	AT5G15020.1	SIN3-like 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2869802	2877063	+
GWHAAZE00000094	mRNA	2869802	2877063	+
GWHAAZE00000094	exon	2869802	2869923	+
GWHAAZE00000094	exon	2870012	2870195	+
GWHAAZE00000094	exon	2870283	2870381	+
GWHAAZE00000094	exon	2870486	2870647	+
GWHAAZE00000094	exon	2870737	2871034	+
GWHAAZE00000094	exon	2871141	2871277	+
GWHAAZE00000094	exon	2871420	2871495	+
GWHAAZE00000094	exon	2871577	2871606	+
GWHAAZE00000094	exon	2871790	2871983	+
GWHAAZE00000094	exon	2872077	2872231	+
GWHAAZE00000094	exon	2872331	2872458	+
GWHAAZE00000094	exon	2872552	2872806	+
GWHAAZE00000094	exon	2873717	2874298	+
GWHAAZE00000094	exon	2874494	2874588	+
GWHAAZE00000094	exon	2874675	2875247	+
GWHAAZE00000094	exon	2875455	2875555	+
GWHAAZE00000094	exon	2875645	2875783	+
GWHAAZE00000094	exon	2875865	2876017	+
GWHAAZE00000094	exon	2876121	2876284	+
GWHAAZE00000094	exon	2876456	2876567	+
GWHAAZE00000094	exon	2876667	2876705	+
GWHAAZE00000094	exon	2876992	2877063	+
GWHAAZE00000094	CDS	2869802	2869923	+
GWHAAZE00000094	CDS	2870012	2870195	+
GWHAAZE00000094	CDS	2870283	2870381	+
GWHAAZE00000094	CDS	2870486	2870647	+
GWHAAZE00000094	CDS	2870737	2871034	+
GWHAAZE00000094	CDS	2871141	2871277	+
GWHAAZE00000094	CDS	2871420	2871495	+
GWHAAZE00000094	CDS	2871577	2871606	+
GWHAAZE00000094	CDS	2871790	2871983	+
GWHAAZE00000094	CDS	2872077	2872231	+
GWHAAZE00000094	CDS	2872331	2872458	+
GWHAAZE00000094	CDS	2872552	2872806	+
GWHAAZE00000094	CDS	2873717	2874298	+
GWHAAZE00000094	CDS	2874494	2874588	+
GWHAAZE00000094	CDS	2874675	2875247	+
GWHAAZE00000094	CDS	2875455	2875555	+
GWHAAZE00000094	CDS	2875645	2875783	+
GWHAAZE00000094	CDS	2875865	2876017	+
GWHAAZE00000094	CDS	2876121	2876284	+
GWHAAZE00000094	CDS	2876456	2876567	+
GWHAAZE00000094	CDS	2876667	2876705	+
GWHAAZE00000094	CDS	2876992	2877063	+

Transcript Sequence
>GWHTAAZE033243 GCACAAAAACTAACGACCAATGATGCATTAACTTATTTGAAAGAAGTTAAGGACATGTTCCAGGACCAGAGGGAGAAATATGACATGTTTCTTGATGTAATGAAGGATTTTAAGGCTCAAAGGATTGATACTGCTGGAGTCATAGCCAGGGTGAAAGAACTATTTAAAGGGCACAATAATTTAATTTTTGGGTTTAACACCTTCTTGCCCAAGGGTTACGAAATCACTGTTATTGACGAGGAAGAGGCCCCGCCTAAGAGAACAGTCGAGTTTGACGAGGCCATAAGTTTTGTAAATAAGATAAAGAAACGTTTCCAAAACGATGATCATGTATACAAGTCTTTTCTGGACATCTTGAACATGTACCGGAAGGAGCATAAAGGCATCAATGAGGTTTACCATGAGGTTGCTCAACTTTTCAATCAACATCCAGACTTGCTTGACGAGTTCACAAGATTTTTGCCAGATGCTTCAGCAGCCCATGCTTCATCTGGCCGGCAACCTTTTCATCGTTACGACGAGAGGAGCTCTGCTGTGGTCACGATGCGGCAGACACACACAGACAAGCGTCCAAATCGAGACAGGACCATTGCTCCTCACACCGAACGCGATTTAAGTGTTGAGCGTCCCGATTTGGATGATGACAAAACGATGATGAAATTGCATAAGGAGCAGAGGAGGCGTGCTGAAAAGGAGAGCAGGGATAGAAGAAACCGTGATCAGGATTATAGAGAACCCGAGCATGATAACAATAGGGATATGGGCATGCATCGCCTTTCTGAGAAAAGGAAATCTGCTCGGAAGGTTGACGACTTTGGAGCAAATACCATTTTGGCCCCTTATAGTGATAAAGATTCATTGAAAAGTATTTACAACCAAGAGATCACTTTCTGTGAGAAAGTGAAGGAGAGATTACGCAATCCAGATGATTATCAGGCATTCTTGAAATGCCTTCATATATATAGCACAGAAATAATTACAAGAAAGGAATTACAAAGTTTGGTTGCTGATTTGCTTGGAAAATATCCAGATCTGATGGAAGGTTTCAATGAATTTTTAGAGCGGTGTGAAAGTATCGATGGACTCCTTGCTGGTGTTATGAACAAAAAAACTTTATGGAATGAAGGGCACGCATCCAAATCAATGAAGGTAGAAGAAAAAGACAAGGAACAGAGGCGAGAATTGGAAGCAGCTAAAGAAAAGGATAGATTCAAGGAGAAGTATTGGGGAAAATCTATTCAAGAGCTTGATCTCACTAACTGTCAACGCTGCACCCCTAGTTATAGGCTTCTTCCCGCAGATTATCCTATTCCTTCGGCAAGCCAGCGTTCAGAACTTGGCGCCCAGGTGTTGAACGACCACTGGGTATCTGTCACTTCGGGCAGTGAGGACTACTCTTTCAAACATATGCGCAGAAATCAATATGAAGAGAGCCTATTTAGATGTGAAGATGATAGGTTTGAGCTAGATATGTTGTTGGAGTCTGTTAGTTCAGCTGCTAAGCGTGTGGAGGAGTTATTGAACAGCATCAATGACAGTTCAAACCATCGGGAGAGTCCCATCCATATTGAAGACTACTTCACAGCTCTAAATTTGAGATGCATTGAGCGTCTATATGGTGACCATGGTCTTGATGTGATGGACATATTACGAAAGAACCCACCCCTCGCTTTGCCTGTTGTATTAACCCGGCTAAAGCAGAAACAAGAGGAGTGGACAAAGTGTCGCTCAGATTTTAACAAGGTTTGGGCTGATATTTATGCTAAGAACCATTACAAATCGCTTGATCATCGTAGCTTCTACTTCAAGCAACAGGACTCAAAGAACTTGAGCACAAAATCCTTAGTTGCCGAGATCAAAGAACTCAAGGAGAAAAAACAAGAGGAGGATAATGTGCTTTTTAGTATTGCTGCTGGAAGTCAACATCCTATAACTCCAAATCTTCAATTCGAGTACTCCGATATTGAAATTCATGAAGACTTGCATAAACTTATTAAGTACTCCTCGGAAGAGGTTTGCACAAGCAAAGAACAATTGAATAAAGTTATGAAACTTTGGACTACTTTCTTGGAGCCAATGTTGGATGTTCCTTCATTGCCTCACGGTTCGGAGAGTAATGAAGATTCTGTGATAACTAAGCATCGTAATGCGAAAAGTAATGGTGGTGATGCTGCTGCCTTGAATAATTCTAAGCAATCAAAAGCCATTTGCAATGGAGATGAAAACACTTCACCATTGAACTTAATAAATGGGGATACTTTGGCTAAAGAAGAGCCAAAAAACAACACATCTATTATGGAGAAATCGTCTGAGTTCAACAGAAGAGTGGGTTCCAGTGAACGATTAACAAATTCGGAAGCAAATGTTGCTGTTGGAATAGACAATAATATTCATTCCAGAATTGGAATCGAAATAGCATCAGGGCGCGATTCAACTCCTTTGAGACCCAGTAATAATGCTGCTGATGATGTTCTTGGTGGGGCCAAGTCTAATATTGACAATGTACCTTCATCAGAGAACTGTGACGCCTCGAGATCAGTTCCATCAGCAAATGGAGCTTCAGTAGAAGGTTCCAAAATTGAGAAAGAGGAGGGTGAATTATCACCTAATGGTGATTTTGAAGAGGATAATTTCGTTGGCTATGGAGGAGGGAGTGGTTCTCAGCCTATAATACCCAATACAAAACATGAAAACGTACACTACCAAGGTGGTGGGAATGGGGAAGTGATGTGTTCTCAAGATGCAGATGCTGATGACGAAGACAGTGAAAATGCTTCCGAGGCTGCTGAAGATGTATCAGGAAGCGAGTCTGCTGCAGATGAGTGTGATCATGAGGAAGAAGATGGAGAGGGTGATGAGGAGGTTGATGGTAAAGCTGATGAGAGTGAAGGGGAGGCTGAAGGGGGGATGGATGATGGGCACTTTGTTGGAGGAGATGGTGGTGTATCTTTACCACCAGCCGAACGTTTCTTGGTTACCGCAAAGCCTTTGGCCAAGCACGTGGCCTCGCTATTACGCGATAATGTGAACAAGGGTTCACGAGTGTTTTATGGAAACGATGCATTCTATGTGCTTTTTAGGCTTCACCAGATACTGTATGAGCGATTATTATCAGCTAAATTAAATTCAACATCTGCTGAAACGAAATGGAGAACTGCAAAGGATGGTGGTCGCCCCGATCTCTATGCCAGATTTATGAAGGCGTTGTATAATTTGCTTGACGGATCTTCTGATAATTCCAAGTTTGAGGATGATTGTCGAGCTATTATTGGAAATCAGTCTTATGTGTTATTTACTTTGGACAAGTTGATATATAAGCTGGTCAAACAGCTTCAAACTGTCGCAACTGACGAGATGGACAGTAAGCTGCTTCAGTTATATGAATATGAAAAATCTCGGAAATCAGAGAAATATGTTGATTCTGTTTATTACGAGAATGCCCATGTCCTCCTTCATGATGAGAACATATTCCGATTTGAGTGTTCCTCTGGGCCATCCCGTTTGTCCATCCAGCTGATGGATGATGGAAATGAAAAACCTGAGGTGGTTGCAGTTTCTGTGGATCCCTTTTTTGCATCTTATCTTCACAAGGATTTTCTTTCAGTTTTTTCTGTTAGAAAGGAATCCCCCAGCATCCTTCTGCGGAGAAACAAGCGTAAATTTGCAGACCCCGACGAATGTTCTGCTATATGCATGGCTATGGAAGATGTTCGTATGGTTAATGGTTTGGAATGCAAGATGGCTTGCAACTCATCAAAGATCTCCTATGTTCTAGACACAGAAGATTTCTTCTATCGTTCTCTTGTTTCATTGTACAAGTCGAAGAGCGGAGCAACTGGTGAGTTTGGTTCAAATCGAAAGGGTGATTGA

Network for GWHGAAZE033204

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02671.22	PAH	25	69	1.00E-15
PF02671.22	PAH	110	154	2.70E-17
PF02671.22	PAH	309	353	6.10E-12
PF08295.13	Sin3_corepress	422	514	3.20E-34
PF16879.6	Sin3a_C	1016	1264	2.20E-56

Protein Sequence

>GWHPAAZE033225
AQKLTTNDALTYLKEVKDMFQDQREKYDMFLDVMKDFKAQRIDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITVIDEEEAPPKRTVEFDEAISFVNKIKKRFQNDDHVYKSFLDILNMYRKEHKGINEVYHEVAQLFNQHPDLLDEFTRFLPDASAAHASSGRQPFHRYDERSSAVVTMRQTHTDKRPNRDRTIAPHTERDLSVERPDLDDDKTMMKLHKEQRRRAEKESRDRRNRDQDYREPEHDNNRDMGMHRLSEKRKSARKVDDFGANTILAPYSDKDSLKSIYNQEITFCEKVKERLRNPDDYQAFLKCLHIYSTEIITRKELQSLVADLLGKYPDLMEGFNEFLERCESIDGLLAGVMNKKTLWNEGHASKSMKVEEKDKEQRRELEAAKEKDRFKEKYWGKSIQELDLTNCQRCTPSYRLLPADYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRVEELLNSINDSSNHRESPIHIEDYFTALNLRCIERLYGDHGLDVMDILRKNPPLALPVVLTRLKQKQEEWTKCRSDFNKVWADIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKELKEKKQEEDNVLFSIAAGSQHPITPNLQFEYSDIEIHEDLHKLIKYSSEEVCTSKEQLNKVMKLWTTFLEPMLDVPSLPHGSESNEDSVITKHRNAKSNGGDAAALNNSKQSKAICNGDENTSPLNLINGDTLAKEEPKNNTSIMEKSSEFNRRVGSSERLTNSEANVAVGIDNNIHSRIGIEIASGRDSTPLRPSNNAADDVLGGAKSNIDNVPSSENCDASRSVPSANGASVEGSKIEKEEGELSPNGDFEEDNFVGYGGGSGSQPIIPNTKHENVHYQGGGNGEVMCSQDADADDEDSENASEAAEDVSGSESAADECDHEEEDGEGDEEVDGKADESEGEAEGGMDDGHFVGGDGGVSLPPAERFLVTAKPLAKHVASLLRDNVNKGSRVFYGNDAFYVLFRLHQILYERLLSAKLNSTSAETKWRTAKDGGRPDLYARFMKALYNLLDGSSDNSKFEDDCRAIIGNQSYVLFTLDKLIYKLVKQLQTVATDEMDSKLLQLYEYEKSRKSEKYVDSVYYENAHVLLHDENIFRFECSSGPSRLSIQLMDDGNEKPEVVAVSVDPFFASYLHKDFLSVFSVRKESPSILLRRNKRKFADPDECSAICMAMEDVRMVNGLECKMACNSSKISYVLDTEDFFYRSLVSLYKSKSGATGEFGSNRKGD

Gene family

Gene family	subfamily
Transcription Factors Family	Others

KEGG pathway

KO	Enzyme	pathway	mapID
K11644	SIN3A	Mitophagy - yeast	map04139
K11644	SIN3A	Thyroid hormone signaling pathway	map04919

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	31.680
	SRR3591706	second leaf	19.229
	SRR3591707	mature leaf	27.493
	SRR3591708	Shoot apex	20.967
	SRR3591709	Stem	40.856
	SRR3591710	White floral bud	46.197
	SRR3591711	White flower	59.314
	SRR3591712	Green floral bud	35.452
	SRR3591713	Yellow flower	47.555
SRP173429	SRR8316895	Juvenile bud stage	17.591
	SRR8316896	Juvenile bud stage	26.433
	SRR8316897	Juvenile bud stage	12.001
	SRR8316894	Third green stage	12.888
	SRR8316900	Third green stage	30.795
	SRR8316901	Third green stage	28.280
	SRR8316898	Complete white stage	11.000
	SRR8316899	Complete white stage	34.474
	SRR8316903	Complete white stage	30.957
	SRR8316902	Silver flowering stage	19.296
	SRR8316904	Silver flowering stage	37.496
	SRR8316905	Silver flowering stage	14.389
	SRR8316906	Gold flowering stage	54.396
	SRR8316907	Gold flowering stage	51.122
	SRR8316908	Gold flowering stage	49.605
SRP132670	SRR6706286	Control	25.766
	SRR6706287	Light intensity 50%	28.247
	SRR6706288	Light intensity 20%	27.880
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.650
	CNS0095593	Slightly white alabastrum(diploid) 2	11.264
	CNS0095594	Slightly white alabastrum(diploid) 3	12.299
	CNS0095595	Whole white alabastrum(diploid) 2	12.451
	CNS0095596	Whole white alabastrum(diploid) 3	10.514
	CNS0095597	Whole white alabastrum(diploid) 4	12.254
	CNS0095598	Silvery flower (diploied) 1	20.803
	CNS0095599	Silvery flower (diploied) 2	17.904
	CNS0095600	Silvery flower (diploied) 3	51.723
	CNS0095601	Golden flower (diploid) 1	16.909
	CNS0095602	Golden flower (diploid) 2	50.552
	CNS0095603	Golden flower (diploid) 3	47.621
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.244
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.081
	CNS0095606	Slightly white alabastrum(tetraploid) 3	30.222
	CNS0095607	Whole white alabastrum(tetraploid) 1	10.467
	CNS0095608	Whole white alabastrum(tetraploid) 2	11.539
	CNS0095609	Whole white alabastrum(tetraploid) 3	26.245
	CNS0095610	Silvery flower (tetraploid) 1	55.735
	CNS0095611	Silvery flower (tetraploid) 2	46.939
	CNS0095612	Silvery flower (tetraploid) 3	42.930
	CNS0095613	Golden flower (tetraploid) 1	24.246
	CNS0095614	Golden flower (tetraploid) 2	42.887
	CNS0095615	Golden flower (tetraploid) 3	53.267
CRA001975	CRR073297	Stem 1	19.557
	CRR073298	Stem 2	17.691
	CRR073299	Stem 3	13.155
	CRR073300	Leaf 1	21.703
	CRR073301	Leaf 2	17.541
	CRR073302	Leaf 3	11.934
	CRR073303	Juvenile bud 1	13.529
	CRR073304	Juvenile bud 2	12.335
	CRR073305	Juvenile bud 3	19.669
	CRR073306	Third green 1	9.581
	CRR073307	Third green 2	8.054
	CRR073308	Third green 3	12.526
	CRR073309	Second white 1	12.371
	CRR073310	Second white 2	22.879
	CRR073311	Second white 3	29.775
	CRR073312	Silver flowering 1	21.467
	CRR073313	Silver flowering 2	20.599
	CRR073314	Silver flowering 3	22.532
	CRR073315	Gold flowering 1	5.995
	CRR073316	Gold flowering 2	14.305
	CRR073317	Gold flowering 3	5.858
	CRR073318	Tawny withering 1	14.748
	CRR073319	Tawny withering 2	15.133
	CRR073320	Tawny withering 3	12.556