Gene detail

Detail information of GWHGAAZE033191

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009798894.1	1.8007E-144	PREDICTED: mitochondrial outer membrane protein porin of 34 kDa [Nicotiana sylvestris]
Swissprot	tr\|P42055\|VDAC1_SOLTU	3E-146	Mitochondrial outer membrane protein porin of 34 kDa
trEMBL	tr\|A0A061EEK9\|A0A061EEK9_THECC	1E-144	Voltage dependent anion channel 1 {ECO:0000313\|EMBL:EOY03376.1}
TAIR10	AT3G01280.1	4E-95	voltage dependent anion channel 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000094	gene	2733612	2735187	+
GWHAAZE00000094	mRNA	2733612	2735187	+
GWHAAZE00000094	exon	2733612	2733764	+
GWHAAZE00000094	exon	2734389	2734475	+
GWHAAZE00000094	exon	2734587	2734795	+
GWHAAZE00000094	exon	2734881	2735187	+
GWHAAZE00000094	CDS	2733612	2733764	+
GWHAAZE00000094	CDS	2734389	2734475	+
GWHAAZE00000094	CDS	2734587	2734795	+
GWHAAZE00000094	CDS	2734881	2735187	+

Transcript Sequence
>GWHTAAZE033230 GCTATCACATCATCAGGAACAAAGAAAGGCGAGCTATTTATTGCTGATGTAAATACTCAGTTGAAGAACAAGAACATAACCACTGATATTAAAGTGGATACCAATTCCAATGTAAGCTGCACTTTCCAATTTTATCTCAAATTCTCAATATTTCTGTTCACAACCATCACGGTTAATGAACCTGCCCCAGGGCTGAAGACAATCCTTAGCTTCAGAGTTCCCGATCAACAATCTGGCAAGCTGGAAGTACAATACTTACATGACTATGCTGGAATCAGCTCAAGTATAGGGTTGACAGCAAACCCAATTGTCAACTTCTCAGGGGTGGTGGGAACCAATGTGGTCTCACTTGGAACCGATGTCTCCTTTGACACAAAAACAGGCAACTTCACCAAATGCAACGCTGGATTGAGCTTCGCCAATGCCGATCTTATTGGTTCATTGACCCTGAATGACAAGGGTGACACTTTGAACGCGTCCTACTACCATACTGTGAGCCCATTGACCAACACCGCTGTAGGAGCAGAGGTGGCCCACAGCTTCTCGACCAATGAGAACATCATCACCGTTGGGACCCAGCATGCGTTGGATCCACTGACCACAGTCAAGGCCCGGGTCAACAACTTGGGCAAGGCAAGTGGTCTTATTCAGCATGAGTGGCGCCCAAGGTCCCTTTTCACCATTTCAGGGGAGGTAGACACCAAGGCTGTAGACAAGTCTGCCAAGTTTGGGTTGGCCTTGGCTCTTAAGCCATAG

Network for GWHGAAZE033191

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01459.23	Porin_3	2	244	1.90E-55

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K15040	VDAC2	Calcium signaling pathway	map04020
		cGMP-PKG signaling pathway	map04022
		Ferroptosis	map04216
		Necroptosis	map04217
		Cellular senescence	map04218
		NOD-like receptor signaling pathway	map04621
		Cholesterol metabolism	map04979

Gene Ontology

GO term	Ontology	Name
GO:0055085	biological_process	transmembrane transport
GO:0005741	cellular_component	mitochondrial outer membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	173.908
	SRR3591706	second leaf	79.021
	SRR3591707	mature leaf	40.081
	SRR3591708	Shoot apex	153.893
	SRR3591709	Stem	88.114
	SRR3591710	White floral bud	106.255
	SRR3591711	White flower	220.520
	SRR3591712	Green floral bud	155.144
	SRR3591713	Yellow flower	115.987
SRP173429	SRR8316895	Juvenile bud stage	61.733
	SRR8316896	Juvenile bud stage	97.530
	SRR8316897	Juvenile bud stage	55.401
	SRR8316894	Third green stage	43.671
	SRR8316900	Third green stage	139.140
	SRR8316901	Third green stage	116.361
	SRR8316898	Complete white stage	35.450
	SRR8316899	Complete white stage	87.814
	SRR8316903	Complete white stage	43.921
	SRR8316902	Silver flowering stage	41.941
	SRR8316904	Silver flowering stage	49.275
	SRR8316905	Silver flowering stage	23.758
	SRR8316906	Gold flowering stage	146.284
	SRR8316907	Gold flowering stage	126.327
	SRR8316908	Gold flowering stage	156.810
SRP132670	SRR6706286	Control	169.604
	SRR6706287	Light intensity 50%	168.236
	SRR6706288	Light intensity 20%	188.292
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	83.043
	CNS0095593	Slightly white alabastrum(diploid) 2	104.733
	CNS0095594	Slightly white alabastrum(diploid) 3	77.184
	CNS0095595	Whole white alabastrum(diploid) 2	90.193
	CNS0095596	Whole white alabastrum(diploid) 3	89.173
	CNS0095597	Whole white alabastrum(diploid) 4	80.993
	CNS0095598	Silvery flower (diploied) 1	47.298
	CNS0095599	Silvery flower (diploied) 2	50.306
	CNS0095600	Silvery flower (diploied) 3	76.654
	CNS0095601	Golden flower (diploid) 1	45.662
	CNS0095602	Golden flower (diploid) 2	57.562
	CNS0095603	Golden flower (diploid) 3	54.704
	CNS0095604	Slightly white alabastrum(tetraploid) 1	96.195
	CNS0095605	Slightly white alabastrum(tetraploid) 2	89.547
	CNS0095606	Slightly white alabastrum(tetraploid) 3	123.723
	CNS0095607	Whole white alabastrum(tetraploid) 1	62.634
	CNS0095608	Whole white alabastrum(tetraploid) 2	55.089
	CNS0095609	Whole white alabastrum(tetraploid) 3	103.788
	CNS0095610	Silvery flower (tetraploid) 1	86.513
	CNS0095611	Silvery flower (tetraploid) 2	72.285
	CNS0095612	Silvery flower (tetraploid) 3	65.638
	CNS0095613	Golden flower (tetraploid) 1	48.526
	CNS0095614	Golden flower (tetraploid) 2	64.272
	CNS0095615	Golden flower (tetraploid) 3	67.710
CRA001975	CRR073297	Stem 1	152.529
	CRR073298	Stem 2	145.557
	CRR073299	Stem 3	211.000
	CRR073300	Leaf 1	174.229
	CRR073301	Leaf 2	177.939
	CRR073302	Leaf 3	280.429
	CRR073303	Juvenile bud 1	251.127
	CRR073304	Juvenile bud 2	231.847
	CRR073305	Juvenile bud 3	217.471
	CRR073306	Third green 1	69.642
	CRR073307	Third green 2	68.278
	CRR073308	Third green 3	76.721
	CRR073309	Second white 1	266.202
	CRR073310	Second white 2	203.837
	CRR073311	Second white 3	116.986
	CRR073312	Silver flowering 1	79.105
	CRR073313	Silver flowering 2	106.573
	CRR073314	Silver flowering 3	65.512
	CRR073315	Gold flowering 1	163.372
	CRR073316	Gold flowering 2	179.223
	CRR073317	Gold flowering 3	196.984
	CRR073318	Tawny withering 1	212.087
	CRR073319	Tawny withering 2	197.225
	CRR073320	Tawny withering 3	176.723